Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   OCV39_RS19705 Genome accession   NZ_AP025473
Coordinates   1271351..1272535 (+) Length   394 a.a.
NCBI ID   WP_113797920.1    Uniprot ID   -
Organism   Vibrio cortegadensis strain CECT 7227     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1266351..1277535
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV39_RS19685 - 1266825..1267772 (-) 948 WP_261889788.1 LysR family transcriptional regulator -
  OCV39_RS19690 - 1268088..1269317 (+) 1230 WP_261889789.1 DEAD/DEAH box helicase -
  OCV39_RS19695 - 1269661..1269882 (+) 222 WP_017051865.1 hypothetical protein -
  OCV39_RS19700 - 1270067..1270939 (-) 873 WP_017051866.1 NAD(P)-dependent oxidoreductase -
  OCV39_RS19705 cqsA 1271351..1272535 (+) 1185 WP_113797920.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  OCV39_RS19710 - 1272582..1274651 (-) 2070 WP_261889790.1 response regulator -
  OCV39_RS19715 - 1275100..1275441 (-) 342 WP_029203286.1 YggL family protein -
  OCV39_RS19720 emrD 1275941..1277146 (+) 1206 WP_261889791.1 multidrug efflux MFS transporter EmrD -

Sequence

Protein


Download         Length: 394 a.a.        Molecular weight: 43900.07 Da        Isoelectric Point: 6.3359

>NTDB_id=91855 OCV39_RS19705 WP_113797920.1 1271351..1272535(+) (cqsA) [Vibrio cortegadensis strain CECT 7227]
MQKPNSVKPLPTKIENKLDRYLSDNIKPRVNGKHLVLGNIPDIDSIFLQSNDYLSLSGNQKLKDKHITAIQEHNESVVMS
GVFLQNESDIPSFQSNLAKYVGFADCNICQSGWDANIGLLQTICEQDTKVYIDFFAHMSLWEGARIAGADIYPFIHNSVR
HLKKLVKRHGPGIILVDSIYSIRGSVTPLQEIVEIAEEFECAIVVDESHSLGVIGQSGRGLVHSLNLSHKVDFITVSLAK
TFAYRAGAVLSHGKLAQCLPFISNPAIFSSALLPHELDRLDATLDIIIESDVQRANLFSMSEKLRNALRSLGFNIGSETQ
IISLETGDEVNTEKVRDFFYNNGVIGSVFCSPATLKSKNNFRFSLHSKLNEHDINKIIHVCDMAINNDELYFLD

Nucleotide


Download         Length: 1185 bp        

>NTDB_id=91855 OCV39_RS19705 WP_113797920.1 1271351..1272535(+) (cqsA) [Vibrio cortegadensis strain CECT 7227]
ATGCAAAAGCCTAATAGTGTTAAGCCACTACCAACAAAAATAGAAAACAAATTAGACCGTTATTTGTCTGACAATATTAA
ACCACGGGTCAATGGAAAACATCTCGTTCTGGGTAATATACCTGATATCGACTCCATTTTTCTTCAAAGTAATGACTACT
TATCTTTATCTGGTAATCAAAAGCTCAAAGATAAGCACATTACTGCAATACAAGAACATAACGAAAGTGTTGTTATGTCT
GGTGTATTTCTTCAAAATGAAAGTGATATTCCTTCATTCCAATCTAACCTTGCAAAATATGTTGGGTTCGCAGATTGTAA
TATCTGCCAGTCAGGTTGGGATGCCAATATCGGCCTGCTGCAAACCATCTGTGAACAGGATACAAAGGTTTATATCGACT
TTTTTGCTCATATGTCACTCTGGGAAGGGGCAAGAATTGCTGGCGCTGATATCTATCCATTTATTCATAACAGTGTCCGC
CACTTAAAGAAGTTGGTGAAACGCCACGGCCCAGGGATCATCCTCGTAGATTCAATTTACAGCATTCGTGGAAGCGTAAC
GCCACTGCAAGAAATAGTAGAGATAGCGGAAGAGTTTGAGTGCGCGATTGTGGTCGATGAATCTCATTCACTTGGTGTTA
TCGGCCAAAGCGGTAGAGGTTTAGTCCATTCGCTTAACCTAAGCCATAAAGTTGATTTTATCACTGTCAGTTTAGCGAAA
ACTTTCGCTTATCGTGCTGGTGCGGTTCTATCTCACGGCAAACTGGCACAATGTCTGCCTTTTATTTCTAACCCTGCAAT
TTTCAGCTCTGCGCTTTTACCTCATGAACTTGATAGGTTAGACGCTACATTGGACATCATTATCGAAAGTGATGTTCAAA
GAGCTAACTTGTTTTCAATGTCGGAGAAATTAAGAAACGCTCTCAGATCATTAGGATTTAATATTGGTAGTGAAACACAA
ATTATTAGCTTAGAAACAGGAGATGAAGTGAATACAGAAAAAGTTCGTGATTTTTTCTATAACAATGGTGTCATAGGGTC
CGTATTTTGCTCACCTGCCACATTAAAAAGTAAAAATAACTTCCGTTTTTCTTTACATTCAAAGCTTAATGAACACGATA
TAAATAAAATCATACACGTCTGTGATATGGCTATAAATAATGATGAGCTGTATTTCTTAGATTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(46-378)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

54.592

99.492

0.543

Multiple sequence alignment