Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   OCV39_RS18095 Genome accession   NZ_AP025473
Coordinates   854523..855623 (+) Length   366 a.a.
NCBI ID   WP_017053567.1    Uniprot ID   A0A1E5D8Q1
Organism   Vibrio cortegadensis strain CECT 7227     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 849523..860623
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV39_RS18070 - 850186..852243 (+) 2058 WP_261889604.1 peptidase U32 family protein -
  OCV39_RS18075 - 852400..852714 (-) 315 WP_113799774.1 DUF496 family protein -
  OCV39_RS18080 - 852890..853105 (+) 216 WP_240697155.1 hypothetical protein -
  OCV39_RS18085 - 853333..854004 (+) 672 WP_261889605.1 YceH family protein -
  OCV39_RS18090 - 854010..854306 (+) 297 WP_261889606.1 GIY-YIG nuclease family protein -
  OCV39_RS18095 luxP 854523..855623 (+) 1101 WP_017053567.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  OCV39_RS18100 luxQ 855620..858205 (+) 2586 WP_261889607.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ Regulator
  OCV39_RS18105 - 858310..858975 (-) 666 WP_261889608.1 flagellar brake protein -

Sequence

Protein


Download         Length: 366 a.a.        Molecular weight: 41769.21 Da        Isoelectric Point: 5.6830

>NTDB_id=91853 OCV39_RS18095 WP_017053567.1 854523..855623(+) (luxP) [Vibrio cortegadensis strain CECT 7227]
MKRLLLLSALASFSMPLMAHPAQVLTGYWEYKEFLETFPKQNELNQIFSDIVRNDSQKISVKQKEPVTISVVYPGQQVSD
YWVRNIRAFEARLDELGIQYQINQVFTRPNIDVKQQSLSLKKAIQNETDYLIFTLDTTRHRKFIEHVINSEKTKLILQNI
TTPVRAWKNRQPFFYVGFDHSTGSLALADYFKQHVKAGGNYSVLYFSEGYISDARGDTFIQEMSHHSDYELRSSFYTKTT
KASGYDVAKLSIEKTPDLDFIYACSTDVALGAVQALEDLNRTDIKINGWGGGSAELEALERGELDVTVMRMNDDTGVAMA
EAIKLDLEGKKVPTVYSGDFEVVSTEDEPEHIQKLKERAFRYSDKS

Nucleotide


Download         Length: 1101 bp        

>NTDB_id=91853 OCV39_RS18095 WP_017053567.1 854523..855623(+) (luxP) [Vibrio cortegadensis strain CECT 7227]
ATGAAACGTTTACTATTGCTTTCCGCATTGGCTAGTTTTTCCATGCCATTAATGGCGCATCCAGCGCAAGTTCTCACAGG
GTATTGGGAATATAAAGAGTTTCTGGAAACTTTCCCGAAACAGAATGAATTGAACCAGATATTCAGTGATATCGTTCGTA
ACGACTCACAAAAGATTTCGGTTAAACAAAAAGAACCCGTCACAATTTCGGTTGTGTATCCAGGTCAACAGGTATCTGAT
TATTGGGTGCGCAACATCAGAGCATTTGAAGCAAGGCTCGATGAACTTGGCATCCAATACCAAATTAACCAAGTATTTAC
TCGCCCTAATATTGATGTAAAGCAGCAAAGTCTTTCCTTAAAAAAAGCCATTCAAAATGAAACGGATTACTTGATCTTTA
CATTGGATACAACACGTCATCGTAAATTTATTGAGCATGTAATTAATTCCGAAAAAACAAAGCTAATATTGCAAAACATC
ACAACGCCAGTACGCGCATGGAAGAATCGCCAACCTTTCTTCTACGTGGGCTTTGACCACTCAACAGGAAGCTTAGCGTT
AGCGGACTATTTCAAACAGCACGTTAAGGCTGGAGGTAACTATTCGGTACTGTACTTTTCTGAAGGCTACATCAGTGATG
CTAGGGGTGATACTTTTATTCAAGAGATGAGTCACCATTCAGATTACGAATTGCGCTCATCATTCTACACAAAAACGACG
AAAGCCAGCGGGTATGATGTTGCCAAGTTGAGCATTGAAAAAACGCCTGATCTCGATTTTATTTACGCCTGTTCGACGGA
CGTTGCTCTGGGAGCGGTGCAAGCTTTAGAAGACCTGAACCGTACGGATATCAAAATTAACGGATGGGGAGGAGGCTCCG
CCGAACTTGAAGCTTTGGAGCGTGGTGAGCTCGATGTGACGGTTATGCGAATGAATGATGATACAGGCGTTGCAATGGCA
GAAGCGATCAAACTTGATTTAGAAGGTAAGAAGGTGCCTACCGTTTATTCTGGAGACTTTGAAGTAGTCTCTACCGAGGA
TGAGCCCGAACATATCCAAAAATTAAAAGAACGTGCTTTTAGGTATTCAGATAAGTCATGA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-331)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1E5D8Q1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

62.432

100

0.631

Multiple sequence alignment