Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   ABZO29_RS29665 Genome accession   NZ_CP160403
Coordinates   6495336..6497069 (-) Length   577 a.a.
NCBI ID   WP_367323227.1    Uniprot ID   -
Organism   Streptomyces sp. HUAS ZL42     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6490336..6502069
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABZO29_RS29655 (ABZO29_29655) - 6492066..6493373 (+) 1308 WP_367323225.1 RNA polymerase sigma factor -
  ABZO29_RS29660 (ABZO29_29660) rcrQ 6493408..6495336 (-) 1929 WP_367323226.1 ABC transporter ATP-binding protein Regulator
  ABZO29_RS29665 (ABZO29_29665) rcrP 6495336..6497069 (-) 1734 WP_367323227.1 ABC transporter ATP-binding protein Regulator
  ABZO29_RS29670 (ABZO29_29670) - 6497220..6498674 (-) 1455 WP_367323228.1 FGGY family carbohydrate kinase -
  ABZO29_RS29675 (ABZO29_29675) - 6498747..6499049 (-) 303 WP_367323229.1 YtxH domain-containing protein -
  ABZO29_RS29695 (ABZO29_29695) - 6499954..6500187 (+) 234 WP_033530157.1 type II toxin-antitoxin system VapB family antitoxin -
  ABZO29_RS29700 (ABZO29_29700) - 6500184..6500591 (+) 408 WP_367323230.1 PIN domain nuclease -
  ABZO29_RS29705 (ABZO29_29705) - 6500849..6501115 (+) 267 WP_367323231.1 substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62833.91 Da        Isoelectric Point: 5.7559

>NTDB_id=918374 ABZO29_RS29665 WP_367323227.1 6495336..6497069(-) (rcrP) [Streptomyces sp. HUAS ZL42]
MLIRLLRTYLRPYKKPIALLVLLQFLQTCATLYLPTLNADIIDNGVVNGDTGYIIGYGALMIGISLAQVVCNIGAVYYGA
RTASALGRDVRAAVFDRVQSFSSREVGHFGAPSLITRTTNDVQQVQMLALMTFTLMVSAPIMCVGGIVLALGLDVPLSAV
LVAVVPVLGICVTLIVRRLRPLFRSMQVRLDTVNRVLREQITGNRVIRAFVRDEYEEQRFRKSNTDLTEMSLKTGNLLAL
MFPVVMTTVNLSSIAVVWFGAHRIDSGGMAIGDLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLDTSSSVVP
PADPVRELRRHGHLEIRGAGFRYPGAEEPVLKAVDLVARPGETTAVIGSTGSGKSTLLGLVPRLFDATEGEVLVDGVDVS
AVEPQLLARTVGLVPQKPYLFAGTVATNLRYGNPDATDEELWHALEVAQAKDFVERLENGLDSPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALARETAEATVVIVAQRVATIREADRIVVLDEGRVVGTGRHHELMADN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=918374 ABZO29_RS29665 WP_367323227.1 6495336..6497069(-) (rcrP) [Streptomyces sp. HUAS ZL42]
GTGCTCATACGACTTCTGCGGACCTACCTCAGGCCCTACAAGAAACCCATCGCCCTGCTGGTGCTGCTGCAGTTCCTGCA
GACCTGCGCCACTCTCTACCTGCCCACGCTGAACGCGGACATCATCGACAACGGTGTGGTGAACGGCGACACCGGCTACA
TCATCGGCTACGGCGCCCTGATGATCGGCATCTCGCTGGCGCAGGTCGTCTGCAACATCGGCGCGGTCTACTACGGAGCG
CGGACGGCGTCGGCGCTCGGCCGGGACGTGCGGGCGGCCGTCTTCGACCGGGTGCAGTCCTTCTCCTCGCGCGAGGTGGG
GCATTTCGGCGCGCCCTCGCTGATCACCCGTACGACCAACGACGTCCAGCAGGTCCAGATGCTGGCCCTGATGACGTTCA
CGCTGATGGTGTCGGCGCCCATCATGTGCGTGGGCGGCATCGTGCTGGCGCTCGGACTGGATGTGCCGCTGTCCGCGGTA
CTCGTGGCCGTCGTACCGGTACTGGGCATCTGCGTGACCTTGATCGTACGGCGGCTGCGGCCGCTGTTCCGGTCCATGCA
GGTGCGGCTCGACACGGTGAACCGGGTACTGCGCGAGCAGATCACCGGCAACCGCGTCATCCGCGCCTTCGTGCGGGACG
AGTACGAGGAGCAGCGCTTCCGGAAGTCCAACACCGACCTCACCGAGATGTCGCTGAAGACCGGCAACCTGCTCGCGCTG
ATGTTCCCGGTGGTCATGACCACGGTGAACCTGTCGTCGATCGCGGTGGTGTGGTTCGGTGCCCATCGCATCGACAGCGG
TGGGATGGCGATCGGTGACCTGACCGCGTTCCTCGCCTATCTGATGCAGATCGTCATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCGGAGGTGTGCGCCGAACGCATCCAGGAGGTCCTGGACACCTCGTCGAGCGTGGTGCCG
CCGGCCGACCCGGTGCGGGAGCTGCGCCGCCACGGCCATCTGGAGATCCGCGGGGCGGGCTTCCGCTACCCGGGTGCCGA
GGAGCCGGTGCTGAAGGCCGTCGACCTGGTGGCGCGGCCCGGTGAGACCACTGCCGTGATCGGGTCCACGGGCAGCGGCA
AGTCGACGCTGCTCGGGCTGGTGCCGCGGCTGTTCGACGCGACCGAGGGGGAGGTGCTCGTCGACGGCGTCGACGTGTCG
GCCGTCGAGCCGCAGTTGCTGGCGCGGACCGTCGGGCTGGTGCCGCAGAAGCCGTATCTGTTCGCGGGCACGGTGGCGAC
CAATCTGCGGTACGGCAATCCGGACGCGACGGACGAGGAGCTGTGGCACGCGCTGGAGGTGGCGCAGGCCAAGGACTTCG
TGGAGCGCCTTGAGAACGGGCTGGACTCCCCCATCGCGCAGGGCGGCACCAATGTCTCCGGCGGTCAGCGGCAGCGGCTC
GCCATCGCGCGCACGCTGGTGCAGCGCCCGGAGATCTACCTCTTCGACGACTCCTTCTCCGCGCTCGACTACGCCACGGA
CGCGGCGCTGCGCGCGGCCCTGGCCCGCGAGACCGCGGAGGCGACCGTCGTGATCGTCGCCCAGCGCGTGGCGACCATCC
GGGAGGCCGACCGGATCGTCGTCCTGGACGAGGGACGGGTCGTCGGCACCGGCCGGCACCACGAGCTGATGGCGGACAAC
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCTGCCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(351-498)

ABC transporter transmembrane region (ABC_membrane)

(18-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

41.252

94.107

0.388