Detailed information
Bioinformatically predicted
Overview
| Name | clpC | Type | Regulator |
| Locus tag | VNN38_RS05560 | Genome accession | NZ_CP141697 |
| Coordinates | 1126978..1129224 (+) | Length | 748 a.a. |
| NCBI ID | WP_019292953.1 | Uniprot ID | - |
| Organism | Lactococcus petauri strain R21-77-2 | ||
| Function | degradation of ComX (predicted from homology) Competence regulation |
||
Genomic Context
Location: 1121978..1134224
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| VNN38_RS05545 (VNN38_05545) | dnaG | 1123455..1125341 (+) | 1887 | WP_019292952.1 | DNA primase | - |
| VNN38_RS05550 (VNN38_05550) | - | 1125377..1125520 (+) | 144 | Protein_1038 | translation initiation factor IF-2 N-terminal domain-containing protein | - |
| VNN38_RS05555 (VNN38_05555) | rpoD | 1125635..1126759 (+) | 1125 | WP_306723678.1 | RNA polymerase sigma factor RpoD | - |
| VNN38_RS05560 (VNN38_05560) | clpC | 1126978..1129224 (+) | 2247 | WP_019292953.1 | ATP-dependent Clp protease ATP-binding subunit | Regulator |
| VNN38_RS05565 (VNN38_05565) | yqeK | 1129280..1129867 (+) | 588 | Protein_1041 | bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK | - |
| VNN38_RS05570 (VNN38_05570) | - | 1129950..1130195 (+) | 246 | WP_019292955.1 | hypothetical protein | - |
| VNN38_RS05575 (VNN38_05575) | def | 1130240..1130866 (-) | 627 | WP_017370260.1 | peptide deformylase | - |
| VNN38_RS05580 (VNN38_05580) | - | 1130971..1131426 (+) | 456 | WP_019292956.1 | RNA pyrophosphohydrolase | - |
| VNN38_RS05585 (VNN38_05585) | uvrB | 1131423..1133411 (+) | 1989 | WP_019292957.1 | excinuclease ABC subunit UvrB | - |
| VNN38_RS05590 (VNN38_05590) | fabZ | 1133438..1133896 (-) | 459 | WP_003134189.1 | 3-hydroxyacyl-ACP dehydratase FabZ | - |
Sequence
Protein
Download Length: 748 a.a. Molecular weight: 83414.36 Da Isoelectric Point: 4.7218
>NTDB_id=918373 VNN38_RS05560 WP_019292953.1 1126978..1129224(+) (clpC) [Lactococcus petauri strain R21-77-2]
MLCQNCKINEATIHLYTNVNGQRKQVDLCQNCYQIMKSGGQESLFAGATNISNNDDPFNPFPDIFQALHGNDQGRTMTPP
TQAGGRGPGGPQNPRGSQAPKGLLEEFGVNITDAARRGEIDPVIGRDSEITRVIEILNRRTKNNPVLIGEPGVGKTAVVE
GLAQKIVDGDVPQKLQNKEVIRLDVVSLVQGTGVRGQFEERMQKLMEEIRKRDDVILFIDEIHEIVGAGSAGEGNMDAGN
ILKPALARGELQLVGATTLNEYRIIEKDAALERRMQPVKVDEPSVDETITILRGIQKRYEDYHHVKYSDEAILAAANLSN
RYIQDRFLPDKAIDLLDEAGSKKNLTLKFVDPEDIKKRIEQAEAQKNEAMQREDFEKAAHFRDQIAKLRELQSHEISDTD
MPNITEKDIEAIVEEKTHIPVGDLKEKEQTQLINLAEDLKEHVIGQDEAIDKISKAVRRSRVGLGKPNRPIGSFLFVGPT
GVGKTELAKQLAYELFGSRDSMIRFDMSEYMEKHSVAKLIGAPPGYVGYEEAGQLTERVRRNPYSLILLDEIEKAHPDVM
HMFLQILDDGRLTDAQGRTVSFKDAIIIMTSNAGTGKVEASVGFGAAREGRTNSVLGELGNFFSPEFMNRFDAIIEFSAL
SKENLLKIVDLMLDEVNAQIAQNDIHLDVTQAVKEKLVDLGYDPKMGARPLRRTIQDNIEDAIADFYIEHPEYKELLADL
VDDKIVIVNKPEEVKDTADTSDNEDEEK
MLCQNCKINEATIHLYTNVNGQRKQVDLCQNCYQIMKSGGQESLFAGATNISNNDDPFNPFPDIFQALHGNDQGRTMTPP
TQAGGRGPGGPQNPRGSQAPKGLLEEFGVNITDAARRGEIDPVIGRDSEITRVIEILNRRTKNNPVLIGEPGVGKTAVVE
GLAQKIVDGDVPQKLQNKEVIRLDVVSLVQGTGVRGQFEERMQKLMEEIRKRDDVILFIDEIHEIVGAGSAGEGNMDAGN
ILKPALARGELQLVGATTLNEYRIIEKDAALERRMQPVKVDEPSVDETITILRGIQKRYEDYHHVKYSDEAILAAANLSN
RYIQDRFLPDKAIDLLDEAGSKKNLTLKFVDPEDIKKRIEQAEAQKNEAMQREDFEKAAHFRDQIAKLRELQSHEISDTD
MPNITEKDIEAIVEEKTHIPVGDLKEKEQTQLINLAEDLKEHVIGQDEAIDKISKAVRRSRVGLGKPNRPIGSFLFVGPT
GVGKTELAKQLAYELFGSRDSMIRFDMSEYMEKHSVAKLIGAPPGYVGYEEAGQLTERVRRNPYSLILLDEIEKAHPDVM
HMFLQILDDGRLTDAQGRTVSFKDAIIIMTSNAGTGKVEASVGFGAAREGRTNSVLGELGNFFSPEFMNRFDAIIEFSAL
SKENLLKIVDLMLDEVNAQIAQNDIHLDVTQAVKEKLVDLGYDPKMGARPLRRTIQDNIEDAIADFYIEHPEYKELLADL
VDDKIVIVNKPEEVKDTADTSDNEDEEK
Nucleotide
Download Length: 2247 bp
>NTDB_id=918373 VNN38_RS05560 WP_019292953.1 1126978..1129224(+) (clpC) [Lactococcus petauri strain R21-77-2]
ATGCTCTGCCAAAATTGTAAAATAAACGAAGCGACAATTCACCTTTATACAAATGTGAATGGCCAGCGTAAGCAAGTAGA
TCTATGCCAAAACTGTTATCAAATTATGAAATCAGGTGGTCAAGAAAGCTTGTTTGCTGGAGCTACAAATATTTCGAATA
ATGATGATCCTTTTAATCCATTTCCAGATATTTTCCAAGCCTTACATGGTAATGATCAAGGTCGGACAATGACACCTCCA
ACACAAGCGGGTGGTCGAGGCCCAGGAGGTCCACAAAATCCTCGTGGAAGTCAAGCACCTAAAGGACTTCTTGAAGAATT
CGGAGTCAACATTACTGATGCTGCACGTCGTGGAGAAATAGATCCTGTTATTGGACGAGATTCTGAAATTACACGTGTTA
TCGAAATTTTGAATCGTCGAACAAAAAATAATCCTGTTCTTATCGGTGAACCTGGTGTTGGGAAAACAGCAGTTGTTGAA
GGTTTAGCCCAAAAAATAGTTGATGGTGATGTACCACAAAAACTACAAAATAAAGAAGTTATTCGTCTTGATGTTGTCAG
TCTCGTCCAAGGTACTGGTGTGCGTGGGCAATTTGAAGAGCGTATGCAAAAACTGATGGAAGAGATTCGTAAACGTGATG
ACGTTATCCTCTTCATTGATGAAATTCATGAGATTGTGGGCGCAGGCTCTGCTGGGGAAGGAAATATGGATGCTGGAAAT
ATCCTTAAACCGGCTTTAGCACGTGGAGAACTCCAACTTGTTGGAGCAACAACCCTCAATGAATATCGAATTATTGAAAA
AGATGCAGCGCTTGAGCGTCGGATGCAACCTGTTAAAGTTGATGAACCTTCTGTAGATGAGACTATCACAATCTTACGTG
GTATTCAAAAACGTTATGAAGATTATCATCATGTAAAATACTCAGATGAAGCAATCTTAGCTGCTGCAAATCTGTCTAAC
CGTTATATTCAGGACCGTTTCCTTCCCGATAAAGCAATTGACTTGCTGGACGAAGCGGGTTCGAAAAAGAATCTGACCCT
CAAATTTGTTGATCCTGAGGACATAAAGAAACGGATTGAGCAAGCAGAGGCACAAAAAAACGAAGCCATGCAACGTGAAG
ATTTTGAGAAAGCGGCTCATTTCCGTGATCAAATCGCTAAGCTTCGTGAGCTTCAAAGTCATGAAATTTCAGATACTGAC
ATGCCAAATATCACAGAAAAAGATATTGAAGCAATTGTTGAAGAAAAGACACATATACCTGTAGGTGATTTGAAAGAAAA
AGAACAAACACAGCTCATTAATCTAGCTGAAGACTTGAAAGAACATGTTATCGGGCAAGATGAAGCGATTGATAAAATTT
CTAAAGCTGTGCGTCGTTCGCGTGTCGGACTTGGAAAGCCTAATCGTCCTATCGGTTCATTCCTCTTTGTTGGACCTACT
GGTGTAGGGAAGACCGAACTTGCAAAACAATTGGCTTATGAGCTTTTTGGCTCAAGAGATAGCATGATTCGCTTTGACAT
GTCGGAATACATGGAAAAACATAGTGTGGCTAAGTTGATTGGTGCTCCTCCAGGATATGTGGGGTATGAAGAAGCAGGTC
AGTTGACAGAACGTGTGCGCCGTAACCCATACAGCTTAATTTTATTGGATGAGATTGAGAAAGCTCACCCGGATGTAATG
CATATGTTCTTGCAAATTCTTGATGACGGGCGTTTGACAGATGCGCAAGGTCGTACAGTTTCCTTCAAAGATGCCATCAT
CATTATGACATCGAATGCTGGTACAGGTAAGGTTGAAGCAAGTGTTGGTTTTGGCGCTGCACGTGAAGGACGTACGAATT
CAGTGCTTGGAGAGTTGGGTAATTTCTTCAGTCCAGAATTCATGAACCGTTTTGATGCTATCATTGAATTCTCAGCATTG
AGCAAAGAAAACTTGCTTAAGATTGTAGATTTAATGTTGGATGAAGTAAATGCTCAAATCGCTCAAAATGATATTCATCT
TGACGTCACACAGGCGGTTAAAGAAAAACTCGTTGATCTGGGCTACGATCCGAAAATGGGAGCACGCCCATTACGTCGTA
CCATCCAGGATAATATCGAGGATGCTATTGCTGATTTTTATATCGAGCATCCTGAGTATAAAGAATTACTTGCAGACTTG
GTTGATGATAAGATTGTTATTGTGAATAAGCCTGAAGAAGTAAAAGACACAGCGGATACATCTGATAATGAAGATGAAGA
GAAATAA
ATGCTCTGCCAAAATTGTAAAATAAACGAAGCGACAATTCACCTTTATACAAATGTGAATGGCCAGCGTAAGCAAGTAGA
TCTATGCCAAAACTGTTATCAAATTATGAAATCAGGTGGTCAAGAAAGCTTGTTTGCTGGAGCTACAAATATTTCGAATA
ATGATGATCCTTTTAATCCATTTCCAGATATTTTCCAAGCCTTACATGGTAATGATCAAGGTCGGACAATGACACCTCCA
ACACAAGCGGGTGGTCGAGGCCCAGGAGGTCCACAAAATCCTCGTGGAAGTCAAGCACCTAAAGGACTTCTTGAAGAATT
CGGAGTCAACATTACTGATGCTGCACGTCGTGGAGAAATAGATCCTGTTATTGGACGAGATTCTGAAATTACACGTGTTA
TCGAAATTTTGAATCGTCGAACAAAAAATAATCCTGTTCTTATCGGTGAACCTGGTGTTGGGAAAACAGCAGTTGTTGAA
GGTTTAGCCCAAAAAATAGTTGATGGTGATGTACCACAAAAACTACAAAATAAAGAAGTTATTCGTCTTGATGTTGTCAG
TCTCGTCCAAGGTACTGGTGTGCGTGGGCAATTTGAAGAGCGTATGCAAAAACTGATGGAAGAGATTCGTAAACGTGATG
ACGTTATCCTCTTCATTGATGAAATTCATGAGATTGTGGGCGCAGGCTCTGCTGGGGAAGGAAATATGGATGCTGGAAAT
ATCCTTAAACCGGCTTTAGCACGTGGAGAACTCCAACTTGTTGGAGCAACAACCCTCAATGAATATCGAATTATTGAAAA
AGATGCAGCGCTTGAGCGTCGGATGCAACCTGTTAAAGTTGATGAACCTTCTGTAGATGAGACTATCACAATCTTACGTG
GTATTCAAAAACGTTATGAAGATTATCATCATGTAAAATACTCAGATGAAGCAATCTTAGCTGCTGCAAATCTGTCTAAC
CGTTATATTCAGGACCGTTTCCTTCCCGATAAAGCAATTGACTTGCTGGACGAAGCGGGTTCGAAAAAGAATCTGACCCT
CAAATTTGTTGATCCTGAGGACATAAAGAAACGGATTGAGCAAGCAGAGGCACAAAAAAACGAAGCCATGCAACGTGAAG
ATTTTGAGAAAGCGGCTCATTTCCGTGATCAAATCGCTAAGCTTCGTGAGCTTCAAAGTCATGAAATTTCAGATACTGAC
ATGCCAAATATCACAGAAAAAGATATTGAAGCAATTGTTGAAGAAAAGACACATATACCTGTAGGTGATTTGAAAGAAAA
AGAACAAACACAGCTCATTAATCTAGCTGAAGACTTGAAAGAACATGTTATCGGGCAAGATGAAGCGATTGATAAAATTT
CTAAAGCTGTGCGTCGTTCGCGTGTCGGACTTGGAAAGCCTAATCGTCCTATCGGTTCATTCCTCTTTGTTGGACCTACT
GGTGTAGGGAAGACCGAACTTGCAAAACAATTGGCTTATGAGCTTTTTGGCTCAAGAGATAGCATGATTCGCTTTGACAT
GTCGGAATACATGGAAAAACATAGTGTGGCTAAGTTGATTGGTGCTCCTCCAGGATATGTGGGGTATGAAGAAGCAGGTC
AGTTGACAGAACGTGTGCGCCGTAACCCATACAGCTTAATTTTATTGGATGAGATTGAGAAAGCTCACCCGGATGTAATG
CATATGTTCTTGCAAATTCTTGATGACGGGCGTTTGACAGATGCGCAAGGTCGTACAGTTTCCTTCAAAGATGCCATCAT
CATTATGACATCGAATGCTGGTACAGGTAAGGTTGAAGCAAGTGTTGGTTTTGGCGCTGCACGTGAAGGACGTACGAATT
CAGTGCTTGGAGAGTTGGGTAATTTCTTCAGTCCAGAATTCATGAACCGTTTTGATGCTATCATTGAATTCTCAGCATTG
AGCAAAGAAAACTTGCTTAAGATTGTAGATTTAATGTTGGATGAAGTAAATGCTCAAATCGCTCAAAATGATATTCATCT
TGACGTCACACAGGCGGTTAAAGAAAAACTCGTTGATCTGGGCTACGATCCGAAAATGGGAGCACGCCCATTACGTCGTA
CCATCCAGGATAATATCGAGGATGCTATTGCTGATTTTTATATCGAGCATCCTGAGTATAAAGAATTACTTGCAGACTTG
GTTGATGATAAGATTGTTATTGTGAATAAGCCTGAAGAAGTAAAAGACACAGCGGATACATCTGATAATGAAGATGAAGA
GAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpC | Lactococcus lactis subsp. cremoris KW2 |
86.497 |
100 |
0.865 |
| clpE | Streptococcus mutans UA159 |
77.543 |
100 |
0.785 |
| clpE | Streptococcus pneumoniae TIGR4 |
77.702 |
97.727 |
0.759 |
| clpE | Streptococcus pneumoniae Rx1 |
77.702 |
97.727 |
0.759 |
| clpE | Streptococcus pneumoniae D39 |
77.702 |
97.727 |
0.759 |
| clpE | Streptococcus pneumoniae R6 |
77.702 |
97.727 |
0.759 |
| clpC | Bacillus subtilis subsp. subtilis str. 168 |
50.514 |
91.043 |
0.46 |
| clpC | Lactococcus lactis subsp. lactis strain DGCC12653 |
47.798 |
81.952 |
0.392 |
| clpC | Streptococcus pneumoniae Rx1 |
46.935 |
82.888 |
0.389 |
| clpC | Streptococcus pneumoniae D39 |
46.935 |
82.888 |
0.389 |
| clpC | Streptococcus pneumoniae TIGR4 |
46.774 |
82.888 |
0.388 |
| clpC | Streptococcus mutans UA159 |
46.602 |
82.62 |
0.385 |
| clpC | Streptococcus thermophilus LMD-9 |
45.645 |
82.888 |
0.378 |
| clpC | Streptococcus thermophilus LMG 18311 |
45.484 |
82.888 |
0.377 |