Detailed information
Bioinformatically predicted
Overview
| Name | sbcB | Type | Machinery gene |
| Locus tag | OCV39_RS06575 | Genome accession | NZ_AP025472 |
| Coordinates | 1378121..1379545 (-) | Length | 474 a.a. |
| NCBI ID | WP_261889338.1 | Uniprot ID | - |
| Organism | Vibrio cortegadensis strain CECT 7227 | ||
| Function | promote homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1377716..1421929 | 1378121..1379545 | within | 0 |
Gene organization within MGE regions
Location: 1377716..1421929
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OCV39_RS06570 | - | 1377716..1378081 (-) | 366 | WP_017052304.1 | CidA/LrgA family protein | - |
| OCV39_RS06575 | sbcB | 1378121..1379545 (-) | 1425 | WP_261889338.1 | exodeoxyribonuclease I | Machinery gene |
| OCV39_RS06580 | - | 1379727..1380911 (+) | 1185 | WP_261889339.1 | site-specific integrase | - |
| OCV39_RS06585 | - | 1381099..1381776 (+) | 678 | WP_261889340.1 | hypothetical protein | - |
| OCV39_RS06590 | - | 1381933..1382238 (-) | 306 | WP_261889341.1 | AlpA family transcriptional regulator | - |
| OCV39_RS06595 | - | 1382279..1382515 (-) | 237 | WP_261889342.1 | hypothetical protein | - |
| OCV39_RS06600 | - | 1382579..1382758 (-) | 180 | WP_261889343.1 | hypothetical protein | - |
| OCV39_RS06605 | - | 1382768..1383139 (-) | 372 | WP_261889344.1 | hypothetical protein | - |
| OCV39_RS06610 | - | 1383139..1383375 (-) | 237 | WP_261889345.1 | hypothetical protein | - |
| OCV39_RS06615 | - | 1383570..1383836 (-) | 267 | WP_261889346.1 | hypothetical protein | - |
| OCV39_RS06620 | - | 1383967..1384632 (-) | 666 | WP_261889347.1 | LexA family transcriptional regulator | - |
| OCV39_RS06625 | - | 1384760..1384963 (+) | 204 | WP_261889348.1 | helix-turn-helix domain-containing protein | - |
| OCV39_RS06630 | - | 1385022..1385570 (+) | 549 | WP_171757285.1 | toxin YdaT family protein | - |
| OCV39_RS06635 | - | 1385828..1386646 (+) | 819 | WP_261889486.1 | hypothetical protein | - |
| OCV39_RS06640 | - | 1386633..1387052 (+) | 420 | WP_261889349.1 | hypothetical protein | - |
| OCV39_RS06645 | - | 1387052..1387651 (+) | 600 | WP_261889350.1 | hypothetical protein | - |
| OCV39_RS06650 | - | 1388134..1388481 (+) | 348 | WP_261889351.1 | hypothetical protein | - |
| OCV39_RS06655 | - | 1388622..1389098 (+) | 477 | WP_261889352.1 | hypothetical protein | - |
| OCV39_RS06660 | - | 1389261..1390202 (+) | 942 | WP_261889353.1 | hypothetical protein | - |
| OCV39_RS06665 | - | 1390384..1391148 (+) | 765 | WP_261889354.1 | hypothetical protein | - |
| OCV39_RS06670 | - | 1391400..1391612 (+) | 213 | WP_261889355.1 | phage holin family protein | - |
| OCV39_RS06675 | - | 1391593..1392120 (+) | 528 | WP_261889356.1 | lysozyme | - |
| OCV39_RS06680 | - | 1392124..1392480 (+) | 357 | WP_261889357.1 | hypothetical protein | - |
| OCV39_RS06685 | - | 1392452..1392694 (+) | 243 | WP_261889358.1 | hypothetical protein | - |
| OCV39_RS06690 | - | 1392964..1393434 (+) | 471 | WP_171757296.1 | hypothetical protein | - |
| OCV39_RS06695 | - | 1393415..1395502 (+) | 2088 | WP_261889359.1 | phage terminase large subunit family protein | - |
| OCV39_RS06700 | - | 1395499..1395705 (+) | 207 | WP_261889360.1 | hypothetical protein | - |
| OCV39_RS06705 | - | 1395698..1397185 (+) | 1488 | WP_261889361.1 | phage portal protein | - |
| OCV39_RS06710 | - | 1397178..1399361 (+) | 2184 | WP_261889362.1 | head maturation protease, ClpP-related | - |
| OCV39_RS06715 | - | 1399438..1399770 (+) | 333 | WP_261889363.1 | DUF2190 family protein | - |
| OCV39_RS06720 | - | 1399775..1400107 (+) | 333 | WP_261889364.1 | hypothetical protein | - |
| OCV39_RS06725 | - | 1400085..1400612 (+) | 528 | WP_261889365.1 | phage tail protein | - |
| OCV39_RS06730 | - | 1400650..1401084 (+) | 435 | WP_261889366.1 | hypothetical protein | - |
| OCV39_RS06735 | - | 1401053..1401769 (+) | 717 | WP_261889367.1 | phage baseplate assembly protein V | - |
| OCV39_RS06740 | - | 1401766..1402101 (+) | 336 | WP_216599650.1 | phage baseplate protein | - |
| OCV39_RS06745 | - | 1402098..1403078 (+) | 981 | WP_261889368.1 | baseplate J/gp47 family protein | - |
| OCV39_RS06750 | - | 1403062..1403595 (+) | 534 | WP_261889369.1 | phage tail protein | - |
| OCV39_RS06755 | - | 1403595..1406012 (+) | 2418 | WP_261889370.1 | tail fiber protein | - |
| OCV39_RS06760 | - | 1406012..1406461 (+) | 450 | WP_261889371.1 | hypothetical protein | - |
| OCV39_RS06765 | - | 1406552..1406764 (+) | 213 | WP_261889372.1 | hypothetical protein | - |
| OCV39_RS06770 | - | 1406764..1407948 (+) | 1185 | WP_261889373.1 | phage tail protein | - |
| OCV39_RS06775 | - | 1407938..1408426 (+) | 489 | WP_261889374.1 | phage major tail tube protein | - |
| OCV39_RS06780 | - | 1408887..1409087 (+) | 201 | WP_261889375.1 | hypothetical protein | - |
| OCV39_RS06785 | - | 1409150..1409821 (+) | 672 | WP_261889376.1 | phage tail assembly protein | - |
| OCV39_RS06790 | - | 1409975..1412824 (+) | 2850 | WP_261889377.1 | phage tail tape measure protein | - |
| OCV39_RS06795 | - | 1412836..1413216 (+) | 381 | WP_261889378.1 | phage tail protein | - |
| OCV39_RS06800 | - | 1413200..1413403 (+) | 204 | WP_261889379.1 | hypothetical protein | - |
| OCV39_RS06805 | - | 1413403..1414377 (+) | 975 | WP_261889380.1 | hypothetical protein | - |
| OCV39_RS06810 | - | 1414378..1415616 (+) | 1239 | WP_261889381.1 | site-specific integrase | - |
| OCV39_RS06815 | - | 1415695..1415988 (+) | 294 | WP_261889382.1 | MarR family transcriptional regulator | - |
| OCV39_RS06820 | - | 1416058..1416285 (+) | 228 | WP_261889383.1 | hypothetical protein | - |
| OCV39_RS06825 | - | 1416527..1418719 (-) | 2193 | WP_261889384.1 | S8 family peptidase | - |
| OCV39_RS06830 | - | 1418719..1419840 (-) | 1122 | WP_261889385.1 | AAA family ATPase | - |
| OCV39_RS06835 | - | 1420546..1421064 (+) | 519 | WP_171756662.1 | DUF2058 domain-containing protein | - |
| OCV39_RS06840 | - | 1421222..1421929 (-) | 708 | WP_261889386.1 | NAD(P)H-binding protein | - |
Sequence
Protein
Download Length: 474 a.a. Molecular weight: 54683.13 Da Isoelectric Point: 5.5959
>NTDB_id=91836 OCV39_RS06575 WP_261889338.1 1378121..1379545(-) (sbcB) [Vibrio cortegadensis strain CECT 7227]
MNTDEQATYFFFDYETWGVSPAKDRPSQFAGVRTDQDFNIIGEPLVIYCQLPSDYLPGPEAALITRITPQKAMKEGLPEP
EFIAKIHAELSKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRACHALRPEGIIWPENDEGYP
SFKLEHLSKANGIEHENAHDAMADVIATIELAKKLKAAQPKMFDYLYNMRHKRKLNELVDIVNMTPLMHVSGMLGRDCSY
TSWIVPVAWHPTNNNAVIVVDLAKDPTPLFDLGIDQLHKRMFTKRDDLAADELPVPVKLVHLNKCPILAPAKTLTAENAA
NIGIDREQCLKHLALLRQNPEIREKLIGLHSIERQFESSDDVDTKLYEGFFSPADKASMDIIRQADPQHLGTLDITFRDP
RIEPLLFRYRARNYPWTLSESEQQRWANHSREYFESRIESYMLNLENLVHEHESDEKKIALLKSVYQYVEKLVS
MNTDEQATYFFFDYETWGVSPAKDRPSQFAGVRTDQDFNIIGEPLVIYCQLPSDYLPGPEAALITRITPQKAMKEGLPEP
EFIAKIHAELSKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRACHALRPEGIIWPENDEGYP
SFKLEHLSKANGIEHENAHDAMADVIATIELAKKLKAAQPKMFDYLYNMRHKRKLNELVDIVNMTPLMHVSGMLGRDCSY
TSWIVPVAWHPTNNNAVIVVDLAKDPTPLFDLGIDQLHKRMFTKRDDLAADELPVPVKLVHLNKCPILAPAKTLTAENAA
NIGIDREQCLKHLALLRQNPEIREKLIGLHSIERQFESSDDVDTKLYEGFFSPADKASMDIIRQADPQHLGTLDITFRDP
RIEPLLFRYRARNYPWTLSESEQQRWANHSREYFESRIESYMLNLENLVHEHESDEKKIALLKSVYQYVEKLVS
Nucleotide
Download Length: 1425 bp
>NTDB_id=91836 OCV39_RS06575 WP_261889338.1 1378121..1379545(-) (sbcB) [Vibrio cortegadensis strain CECT 7227]
ATGAATACTGATGAACAGGCTACATACTTCTTCTTCGATTATGAGACTTGGGGCGTGAGTCCTGCCAAGGATCGTCCAAG
CCAGTTTGCTGGTGTACGTACCGACCAAGATTTCAATATTATTGGTGAACCTCTTGTTATTTACTGCCAACTACCATCAG
ATTATCTGCCGGGGCCAGAAGCGGCTTTAATTACTCGAATCACGCCACAGAAAGCGATGAAAGAAGGCCTCCCTGAACCT
GAATTTATCGCTAAAATTCATGCTGAACTGTCAAAGCCAAATACCACCAGCTTGGGTTACAACAGCATTCGATTCGATGA
TGAAGTGACACGCTATACTTGTTACCGTAACTTTATCGATCCGTATGCATGGAGCTGGCAGAACGGCAACTCTCGCTGGG
ATCTGCTCGATGTAATGCGCGCCTGTCATGCTTTGCGTCCAGAAGGTATTATTTGGCCTGAGAACGATGAAGGCTACCCA
AGCTTTAAACTTGAGCACCTTTCAAAAGCGAATGGCATCGAACATGAAAATGCCCATGATGCGATGGCAGATGTGATCGC
AACGATTGAGCTGGCGAAAAAGCTCAAAGCAGCACAACCTAAGATGTTCGATTATCTCTACAACATGCGCCACAAACGCA
AACTGAACGAGCTGGTGGACATCGTGAACATGACTCCTCTGATGCATGTTTCAGGTATGCTTGGTCGAGATTGTTCCTAC
ACAAGTTGGATTGTGCCTGTTGCTTGGCATCCAACTAATAACAATGCCGTCATTGTTGTTGATTTAGCAAAAGATCCAAC
CCCACTTTTTGATCTAGGTATTGATCAACTGCATAAACGTATGTTTACCAAGCGTGACGATCTCGCAGCGGATGAACTTC
CTGTTCCAGTTAAATTAGTCCATTTGAATAAATGCCCAATTCTGGCACCGGCTAAAACATTAACCGCAGAAAATGCAGCT
AACATTGGCATTGACCGCGAACAGTGCTTAAAACATTTGGCGTTGTTGAGACAGAATCCTGAGATCCGTGAAAAGCTGAT
TGGTCTGCACAGCATTGAGCGTCAATTTGAATCGTCTGATGATGTAGATACTAAATTATACGAAGGCTTTTTCTCTCCAG
CGGACAAAGCTTCGATGGATATTATTCGTCAAGCTGATCCACAACATCTTGGAACTCTTGATATTACATTCCGAGATCCG
CGAATTGAGCCGCTGTTATTCCGCTACCGTGCGCGTAACTACCCTTGGACACTCAGTGAATCAGAACAACAACGCTGGGC
AAACCATAGTCGCGAGTACTTCGAAAGTCGTATTGAAAGTTATATGCTTAATCTGGAAAACTTAGTTCACGAACATGAAA
GTGACGAAAAGAAGATCGCTCTTTTAAAATCGGTATACCAGTACGTGGAGAAACTCGTCTCTTAA
ATGAATACTGATGAACAGGCTACATACTTCTTCTTCGATTATGAGACTTGGGGCGTGAGTCCTGCCAAGGATCGTCCAAG
CCAGTTTGCTGGTGTACGTACCGACCAAGATTTCAATATTATTGGTGAACCTCTTGTTATTTACTGCCAACTACCATCAG
ATTATCTGCCGGGGCCAGAAGCGGCTTTAATTACTCGAATCACGCCACAGAAAGCGATGAAAGAAGGCCTCCCTGAACCT
GAATTTATCGCTAAAATTCATGCTGAACTGTCAAAGCCAAATACCACCAGCTTGGGTTACAACAGCATTCGATTCGATGA
TGAAGTGACACGCTATACTTGTTACCGTAACTTTATCGATCCGTATGCATGGAGCTGGCAGAACGGCAACTCTCGCTGGG
ATCTGCTCGATGTAATGCGCGCCTGTCATGCTTTGCGTCCAGAAGGTATTATTTGGCCTGAGAACGATGAAGGCTACCCA
AGCTTTAAACTTGAGCACCTTTCAAAAGCGAATGGCATCGAACATGAAAATGCCCATGATGCGATGGCAGATGTGATCGC
AACGATTGAGCTGGCGAAAAAGCTCAAAGCAGCACAACCTAAGATGTTCGATTATCTCTACAACATGCGCCACAAACGCA
AACTGAACGAGCTGGTGGACATCGTGAACATGACTCCTCTGATGCATGTTTCAGGTATGCTTGGTCGAGATTGTTCCTAC
ACAAGTTGGATTGTGCCTGTTGCTTGGCATCCAACTAATAACAATGCCGTCATTGTTGTTGATTTAGCAAAAGATCCAAC
CCCACTTTTTGATCTAGGTATTGATCAACTGCATAAACGTATGTTTACCAAGCGTGACGATCTCGCAGCGGATGAACTTC
CTGTTCCAGTTAAATTAGTCCATTTGAATAAATGCCCAATTCTGGCACCGGCTAAAACATTAACCGCAGAAAATGCAGCT
AACATTGGCATTGACCGCGAACAGTGCTTAAAACATTTGGCGTTGTTGAGACAGAATCCTGAGATCCGTGAAAAGCTGAT
TGGTCTGCACAGCATTGAGCGTCAATTTGAATCGTCTGATGATGTAGATACTAAATTATACGAAGGCTTTTTCTCTCCAG
CGGACAAAGCTTCGATGGATATTATTCGTCAAGCTGATCCACAACATCTTGGAACTCTTGATATTACATTCCGAGATCCG
CGAATTGAGCCGCTGTTATTCCGCTACCGTGCGCGTAACTACCCTTGGACACTCAGTGAATCAGAACAACAACGCTGGGC
AAACCATAGTCGCGAGTACTTCGAAAGTCGTATTGAAAGTTATATGCTTAATCTGGAAAACTTAGTTCACGAACATGAAA
GTGACGAAAAGAAGATCGCTCTTTTAAAATCGGTATACCAGTACGTGGAGAAACTCGTCTCTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sbcB | Vibrio cholerae O1 biovar El Tor strain E7946 |
76.744 |
99.789 |
0.766 |