Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   ABZO29_RS10900 Genome accession   NZ_CP160403
Coordinates   2352031..2352711 (-) Length   226 a.a.
NCBI ID   WP_367319953.1    Uniprot ID   -
Organism   Streptomyces sp. HUAS ZL42     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2347031..2357711
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABZO29_RS10880 (ABZO29_10880) - 2347459..2348604 (-) 1146 WP_367319950.1 ROK family glucokinase -
  ABZO29_RS10885 (ABZO29_10885) - 2348725..2349462 (-) 738 WP_367326103.1 GntR family transcriptional regulator -
  ABZO29_RS10890 (ABZO29_10890) - 2349592..2350614 (+) 1023 WP_367319951.1 Gfo/Idh/MocA family oxidoreductase -
  ABZO29_RS10895 (ABZO29_10895) - 2350722..2351906 (-) 1185 WP_367319952.1 cytochrome P450 -
  ABZO29_RS10900 (ABZO29_10900) vraR 2352031..2352711 (-) 681 WP_367319953.1 response regulator Regulator
  ABZO29_RS10905 (ABZO29_10905) - 2352808..2354043 (-) 1236 WP_367326104.1 histidine kinase -
  ABZO29_RS10910 (ABZO29_10910) - 2354322..2354717 (+) 396 WP_367319954.1 ribonuclease domain-containing protein -
  ABZO29_RS10915 (ABZO29_10915) - 2354737..2354871 (+) 135 WP_367319955.1 hypothetical protein -
  ABZO29_RS10920 (ABZO29_10920) - 2354927..2355820 (+) 894 WP_367319956.1 alpha/beta hydrolase -
  ABZO29_RS10925 (ABZO29_10925) - 2355830..2356456 (-) 627 WP_367319957.1 dihydrofolate reductase family protein -
  ABZO29_RS10930 (ABZO29_10930) alc 2356554..2357684 (-) 1131 WP_367319958.1 allantoicase -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 23946.42 Da        Isoelectric Point: 4.9871

>NTDB_id=918328 ABZO29_RS10900 WP_367319953.1 2352031..2352711(-) (vraR) [Streptomyces sp. HUAS ZL42]
MTAIRVLLVDDDPLVRAGLSFMMGGADDIEIVGEAADGDEVEALVDRTRPDVVLMDIRMPSMDGLTATERLRGRKDAPQV
VVLTTFHADEQVLRALRAGAAGFVLKDTPPADIVDAVRRVAAGDPVLSPTVTRQLMEHAAGTAAGTRGERARERIAALNE
REREVAVAVGRGLPNAEIATGLFMSVATVKTHVSRILAKLGLNNRVQIALLAYDAGLVGNEAEGGH

Nucleotide


Download         Length: 681 bp        

>NTDB_id=918328 ABZO29_RS10900 WP_367319953.1 2352031..2352711(-) (vraR) [Streptomyces sp. HUAS ZL42]
ATGACCGCGATCAGAGTCCTCCTCGTCGACGACGATCCGCTCGTACGGGCCGGGCTGTCCTTCATGATGGGCGGCGCCGA
CGACATCGAGATCGTCGGAGAGGCCGCCGACGGCGACGAGGTCGAGGCGCTCGTCGACCGCACCCGCCCGGACGTGGTCC
TGATGGACATCCGGATGCCGTCGATGGACGGACTGACGGCCACGGAGCGGCTGCGCGGCCGCAAGGACGCCCCGCAGGTC
GTGGTCCTCACCACCTTCCACGCCGACGAGCAGGTGCTGCGGGCGCTGCGCGCCGGTGCCGCCGGCTTCGTGCTCAAGGA
CACCCCGCCCGCCGACATCGTGGACGCCGTGCGCAGGGTCGCGGCCGGTGACCCGGTCCTGTCGCCCACCGTCACCCGCC
AGTTGATGGAGCACGCGGCCGGCACCGCCGCCGGCACCCGGGGCGAGCGCGCGCGTGAACGCATCGCCGCCCTCAACGAG
CGCGAACGCGAGGTCGCCGTGGCCGTCGGCCGGGGCCTGCCCAACGCCGAGATCGCCACCGGCCTCTTCATGAGCGTCGC
CACCGTCAAGACCCACGTCTCCCGGATCCTGGCCAAGCTCGGCCTCAACAACCGGGTGCAGATCGCCCTTCTGGCGTACG
ACGCGGGGCTCGTCGGGAACGAGGCCGAGGGCGGGCACTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(157-212)

Response regulator receiver domain (Response_reg)

(6-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

39.631

96.018

0.381