Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   ABZO29_RS01305 Genome accession   NZ_CP160403
Coordinates   248279..248950 (+) Length   223 a.a.
NCBI ID   WP_367318264.1    Uniprot ID   -
Organism   Streptomyces sp. HUAS ZL42     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 243279..253950
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABZO29_RS01290 (ABZO29_01290) - 243962..245689 (-) 1728 WP_367318261.1 bifunctional 3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase -
  ABZO29_RS01295 (ABZO29_01295) - 245689..246537 (-) 849 WP_367318262.1 fumarylacetoacetate hydrolase family protein -
  ABZO29_RS01300 (ABZO29_01300) - 246756..248282 (+) 1527 WP_367318263.1 histidine kinase -
  ABZO29_RS01305 (ABZO29_01305) vraR 248279..248950 (+) 672 WP_367318264.1 response regulator Regulator
  ABZO29_RS01310 (ABZO29_01310) - 249025..249795 (-) 771 WP_367318265.1 SDR family NAD(P)-dependent oxidoreductase -
  ABZO29_RS01315 (ABZO29_01315) hisD 249792..251114 (-) 1323 WP_367318266.1 histidinol dehydrogenase -
  ABZO29_RS01320 (ABZO29_01320) - 251182..252060 (-) 879 WP_367318267.1 SMP-30/gluconolactonase/LRE family protein -
  ABZO29_RS01325 (ABZO29_01325) - 252057..252494 (-) 438 WP_367318268.1 response regulator -
  ABZO29_RS01330 (ABZO29_01330) - 252680..253447 (+) 768 WP_367318269.1 hypothetical protein -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 23440.84 Da        Isoelectric Point: 6.0112

>NTDB_id=918317 ABZO29_RS01305 WP_367318264.1 248279..248950(+) (vraR) [Streptomyces sp. HUAS ZL42]
MSGQAGHEPIRVLVVDDHAVVRQGMRAFLSLQADMEVVGEAGDAQAALDFLATAAVRGLMPNVVLMDLVMPRLDGVSGIQ
AVKKLHPGVEVVAMTSFSETERVRAALAAGASGYLLKDAEADEVATAIRAATAGETHLDTAVARKITRALTGVSDGLSSL
SQREREVLVLVADGYSNRDIADALTISERTARTHVSSILLKIGVTSRTQAALWAIRQGMTSAP

Nucleotide


Download         Length: 672 bp        

>NTDB_id=918317 ABZO29_RS01305 WP_367318264.1 248279..248950(+) (vraR) [Streptomyces sp. HUAS ZL42]
ATGAGCGGGCAAGCAGGACACGAGCCGATCAGGGTACTGGTCGTGGACGATCACGCGGTCGTGCGGCAGGGGATGAGGGC
ATTCCTGTCCCTGCAGGCCGACATGGAGGTGGTCGGAGAGGCGGGCGACGCTCAGGCCGCACTCGACTTCCTCGCCACGG
CAGCGGTACGGGGCCTCATGCCGAACGTGGTGCTGATGGACCTGGTGATGCCCCGACTCGACGGGGTGTCCGGCATCCAG
GCGGTCAAGAAACTCCACCCCGGCGTCGAGGTGGTGGCGATGACGAGCTTCAGCGAAACCGAGCGGGTGCGCGCCGCGCT
GGCCGCCGGGGCGTCCGGCTACCTGCTCAAGGACGCCGAGGCCGACGAAGTGGCGACCGCCATCCGGGCCGCGACAGCCG
GCGAGACCCACCTGGACACAGCCGTGGCGCGCAAGATCACTCGCGCGCTGACCGGCGTGTCCGACGGCCTGTCGTCCTTG
AGCCAGCGTGAGCGAGAGGTGCTGGTACTGGTCGCCGACGGCTACAGCAACCGGGACATCGCCGATGCGTTGACCATCAG
CGAGCGTACGGCGCGTACGCATGTCAGCAGCATCCTGCTGAAGATCGGGGTGACGTCCAGGACGCAGGCAGCTCTGTGGG
CGATCCGCCAGGGGATGACGTCGGCTCCGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(12-128)

Bacterial regulatory proteins, luxR family (GerE)

(158-214)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

40

94.17

0.377