Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   ABXJ52_RS34975 Genome accession   NZ_CP160402
Coordinates   7769932..7770948 (-) Length   338 a.a.
NCBI ID   WP_367047846.1    Uniprot ID   -
Organism   Streptomyces sp. Je 1-332     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 7764932..7775948
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXJ52_RS34955 (ABXJ52_34955) - 7765230..7766360 (+) 1131 WP_367047838.1 HAMP domain-containing sensor histidine kinase -
  ABXJ52_RS34960 (ABXJ52_34960) - 7766381..7767424 (+) 1044 WP_367047840.1 endonuclease/exonuclease/phosphatase family protein -
  ABXJ52_RS34965 (ABXJ52_34965) - 7767503..7769014 (+) 1512 WP_367047842.1 PE-PGRS family protein -
  ABXJ52_RS34970 (ABXJ52_34970) - 7769024..7769803 (-) 780 WP_367047844.1 NAD(P)H-dependent oxidoreductase -
  ABXJ52_RS34975 (ABXJ52_34975) cytR 7769932..7770948 (-) 1017 WP_367047846.1 LacI family DNA-binding transcriptional regulator Regulator
  ABXJ52_RS34980 (ABXJ52_34980) - 7771219..7772586 (+) 1368 WP_367047848.1 extracellular solute-binding protein -
  ABXJ52_RS34985 (ABXJ52_34985) - 7772669..7773577 (+) 909 WP_367047850.1 sugar ABC transporter permease -
  ABXJ52_RS34990 (ABXJ52_34990) - 7773580..7774467 (+) 888 WP_367047852.1 carbohydrate ABC transporter permease -

Sequence

Protein


Download         Length: 338 a.a.        Molecular weight: 36023.17 Da        Isoelectric Point: 6.5746

>NTDB_id=918310 ABXJ52_RS34975 WP_367047846.1 7769932..7770948(-) (cytR) [Streptomyces sp. Je 1-332]
MAGTRLKDVAERAGVSIKTVSNVVRGEIRVADRTRERVLRAIADLGYQPNASARHLRTGRSGIIALAVPELVAPYFAELA
AQVIAAAKKRGCTVLIEDTGGNADEELRIACGLSDPLIDGVLLSPLRLDEQLLAAREGRVPLVLLGEQSYEIPADHVLID
NSAAAREATDHLLSLGRRRVAVIGQPAGPAHATTVQRMHGYLTALHAVGVPHDPQLAPGTRSFTRAAGAAAMHTLLKLDD
PPDAVFCFNDMLASGALRVAHEHGLRVPDDLAVVGFDDVEESRYSVPSLTTIAPDKRGIAELAVDALLRRIDAGTMAPHT
RLTAGYELVVRESTRVDG

Nucleotide


Download         Length: 1017 bp        

>NTDB_id=918310 ABXJ52_RS34975 WP_367047846.1 7769932..7770948(-) (cytR) [Streptomyces sp. Je 1-332]
GTGGCAGGCACCCGCCTGAAGGACGTCGCGGAGCGCGCCGGGGTATCGATCAAGACCGTGTCGAATGTCGTCCGCGGCGA
GATCAGGGTCGCCGACCGGACACGCGAGCGCGTCCTGCGGGCCATCGCCGACCTCGGCTACCAACCCAACGCCTCCGCAC
GGCACTTGCGCACCGGACGCAGCGGCATCATCGCCCTCGCCGTGCCCGAACTCGTCGCACCGTACTTCGCCGAGCTGGCC
GCGCAGGTCATCGCGGCCGCGAAGAAGCGCGGTTGCACCGTGCTCATCGAGGACACCGGGGGCAACGCGGACGAGGAGCT
CCGTATCGCCTGCGGGCTCAGCGACCCGCTCATCGACGGCGTGCTGCTCAGCCCGCTCCGCCTCGACGAGCAGCTTCTCG
CCGCCCGCGAAGGCCGCGTACCGCTCGTACTCCTGGGCGAGCAGTCGTACGAGATCCCCGCGGACCACGTACTGATAGAC
AACTCGGCGGCGGCACGCGAGGCCACCGACCACCTCTTGTCCCTCGGCCGACGCCGCGTCGCCGTCATCGGCCAGCCCGC
GGGACCCGCCCACGCGACGACGGTCCAGCGCATGCACGGCTATCTGACCGCCCTGCACGCGGTCGGCGTCCCACACGACC
CGCAACTCGCGCCGGGCACACGGTCGTTCACCCGAGCCGCCGGAGCCGCGGCGATGCACACCCTACTGAAGCTGGACGAT
CCGCCTGACGCGGTCTTCTGCTTCAACGACATGCTGGCCTCCGGAGCGCTGCGGGTGGCGCACGAGCACGGCCTGCGGGT
CCCGGACGACCTGGCCGTGGTCGGCTTCGACGACGTGGAGGAATCCCGCTACAGCGTGCCGAGCCTGACCACCATCGCCC
CCGACAAACGAGGCATCGCGGAGCTGGCCGTGGACGCACTGCTCCGCAGAATCGACGCGGGCACGATGGCCCCCCACACG
CGGCTCACCGCGGGATACGAACTGGTGGTGCGGGAGAGCACGCGCGTGGATGGCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(6-50)

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-334)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

37.576

97.633

0.367
  cytR Vibrio parahaemolyticus RIMD 2210633

37.273

97.633

0.364