Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   ABXJ52_RS33240 Genome accession   NZ_CP160402
Coordinates   7400003..7402348 (-) Length   781 a.a.
NCBI ID   WP_367047234.1    Uniprot ID   -
Organism   Streptomyces sp. Je 1-332     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 7395003..7407348
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXJ52_RS33220 (ABXJ52_33220) - 7395517..7396527 (+) 1011 WP_367047222.1 aldo/keto reductase -
  ABXJ52_RS33225 (ABXJ52_33225) - 7396622..7397416 (+) 795 WP_367047225.1 SDR family oxidoreductase -
  ABXJ52_RS33230 (ABXJ52_33230) - 7397429..7398931 (+) 1503 WP_367047227.1 FGGY-family carbohydrate kinase -
  ABXJ52_RS33235 (ABXJ52_33235) - 7398942..7399814 (-) 873 WP_367047230.1 glycoside hydrolase family 16 protein -
  ABXJ52_RS33240 (ABXJ52_33240) uvrA 7400003..7402348 (-) 2346 WP_367047234.1 excinuclease ABC subunit UvrA Machinery gene
  ABXJ52_RS33245 (ABXJ52_33245) - 7402388..7403401 (-) 1014 WP_367047238.1 LLM class flavin-dependent oxidoreductase -
  ABXJ52_RS33250 (ABXJ52_33250) - 7403534..7404022 (+) 489 WP_367047242.1 hypothetical protein -
  ABXJ52_RS33255 (ABXJ52_33255) - 7404071..7404292 (-) 222 WP_160509111.1 dodecin -
  ABXJ52_RS33260 (ABXJ52_33260) - 7404562..7405815 (+) 1254 WP_367049449.1 extracellular solute-binding protein -
  ABXJ52_RS33265 (ABXJ52_33265) egtD 7405842..7406804 (-) 963 WP_367047244.1 L-histidine N(alpha)-methyltransferase -

Sequence

Protein


Download         Length: 781 a.a.        Molecular weight: 83528.39 Da        Isoelectric Point: 6.6697

>NTDB_id=918308 ABXJ52_RS33240 WP_367047234.1 7400003..7402348(-) (uvrA) [Streptomyces sp. Je 1-332]
MHSPHDPFVRVRGAREHNLRNVDVDVPRDVLAVFTGVSGSGKSSLAFGTIYAEAQRRYFESVAPYARRLIHQVGAPKVGE
ITGLPPAVSLQQRRSAPTSRSSVGTVTNLSNSLRMLFSRAGTYPEGAERLDSDAFSPNTAAGACPECHGLGRVHRTTEEL
LVPDPSLSIREGAIAAWPGAWQGKNLRDVLDALGHDVDRPWRELPQADRDWILFTDEQPVVTVHPVRDADRIQRPYQGTY
MSAQRYVMKTFSDSKSQTLRAKAERFLESADCPACGGSRLRPEAMAVTFAGRTIADLAALPLSELATSLQREAGSEAARV
LAADLLARIATITELGLGYLSPDRATPTLSPGELQRLRLATQLRSGLFGVVYVLDEPSAGLHPADTESLLTVLDRLKAAG
NSVFVVEHHLDVMRHADWLVDVGPDAGEHGGQVLHSGPVADLEGVTQSATARFLFDREPAAARAVREPRGWLKVGPVTRH
NLRDVTAEFPLGAFTAVTGVSGSGKSTLVGAITEELEGVGRLVCVDQKPIGRTPRSNLATYTGLFDVVRKVFAATEAART
RGYGVGRFSFNVAGGRCETCQGEGFVSVELLFLPSTYAPCPDCGGARYNPATLEVTYQGRNIAQVLDLTVEAAAEFFADT
PAVARSLRTLLDVGLGYLRLGQPATELSGGEAQRIKLASELQRVRRGHTLYLLDEPTTGLHPADVEVLMRQLHGLVDAGH
SVVVVEHDMAVVAGADWVIDLGPGGGDEGGRVVASGPPGAVATAKGSRTAPYLARATGGDR

Nucleotide


Download         Length: 2346 bp        

>NTDB_id=918308 ABXJ52_RS33240 WP_367047234.1 7400003..7402348(-) (uvrA) [Streptomyces sp. Je 1-332]
ATGCACAGCCCCCATGATCCGTTCGTACGCGTCCGGGGTGCCCGCGAGCACAATCTGCGGAACGTCGACGTGGACGTCCC
GCGTGACGTCCTCGCGGTCTTCACCGGGGTGTCCGGCTCGGGGAAGTCGTCGCTCGCCTTCGGGACGATCTACGCGGAGG
CCCAGCGCCGCTACTTCGAGTCCGTCGCCCCGTACGCCAGACGGCTGATCCACCAGGTGGGGGCGCCGAAGGTCGGTGAG
ATCACCGGGCTGCCCCCGGCGGTCTCGCTCCAGCAGCGGCGCTCGGCGCCCACGTCCCGCTCCTCGGTGGGCACGGTCAC
GAACCTCTCGAACTCTCTGCGCATGCTGTTCTCGCGCGCCGGCACCTACCCCGAGGGCGCCGAGCGGCTGGACTCGGACG
CTTTCTCGCCCAACACCGCCGCCGGGGCCTGCCCCGAGTGCCATGGCCTCGGCCGCGTGCACCGCACGACCGAGGAGCTC
CTGGTCCCCGACCCCTCGCTCTCCATCCGCGAGGGCGCCATCGCGGCCTGGCCCGGTGCCTGGCAGGGCAAGAACCTCCG
CGATGTGCTGGATGCCCTGGGCCACGACGTCGACAGGCCCTGGCGCGAGCTGCCGCAGGCGGACCGGGACTGGATCCTGT
TCACGGACGAGCAGCCGGTGGTGACCGTGCACCCTGTGCGGGACGCGGACCGCATCCAACGCCCGTACCAGGGCACGTAC
ATGAGCGCCCAGCGCTATGTGATGAAGACCTTCTCGGACTCCAAGAGCCAGACCCTGCGTGCCAAGGCCGAGCGGTTCCT
GGAGAGCGCCGACTGCCCGGCGTGCGGCGGCAGCAGGTTGCGCCCGGAGGCGATGGCGGTCACGTTCGCGGGCCGTACGA
TCGCCGACCTCGCCGCGCTCCCCCTCTCGGAGCTGGCCACGTCCCTTCAGCGCGAGGCGGGTTCGGAGGCGGCCCGCGTC
CTGGCCGCCGATCTCCTCGCCCGCATCGCCACGATCACCGAGCTCGGCCTCGGCTATCTGAGCCCGGACCGCGCCACGCC
CACCCTCTCCCCGGGCGAACTCCAACGTCTGCGTCTGGCGACCCAGTTGCGCTCGGGGCTCTTCGGCGTCGTGTACGTCC
TGGACGAACCGTCGGCCGGTCTGCACCCGGCGGACACGGAATCGCTGCTCACCGTCCTCGACCGGCTCAAGGCCGCGGGC
AACTCGGTCTTCGTCGTGGAGCACCATCTCGATGTCATGCGCCACGCCGACTGGCTCGTCGACGTGGGCCCCGACGCCGG
CGAGCACGGCGGGCAGGTGCTGCACAGCGGCCCGGTGGCCGATCTGGAGGGCGTCACGCAGTCCGCGACGGCCCGTTTCC
TCTTCGACCGCGAGCCCGCCGCGGCCCGTGCGGTGCGCGAGCCGCGCGGCTGGCTGAAGGTCGGTCCCGTCACCCGGCAC
AACCTGCGCGACGTGACGGCCGAGTTCCCACTCGGCGCCTTCACCGCGGTCACCGGCGTATCCGGCTCGGGCAAGTCCAC
GCTCGTCGGCGCAATCACCGAGGAACTGGAGGGCGTGGGCCGTCTGGTGTGCGTGGACCAGAAGCCGATCGGCCGCACGC
CCCGCTCGAACCTGGCCACCTACACAGGCCTCTTCGACGTGGTGCGCAAGGTCTTCGCGGCCACGGAGGCGGCACGCACG
CGGGGTTACGGCGTCGGCCGCTTCTCGTTCAACGTCGCGGGCGGGCGCTGCGAGACCTGTCAGGGCGAGGGGTTCGTGAG
CGTGGAGCTGCTCTTCCTGCCCAGTACGTACGCGCCGTGCCCCGACTGCGGGGGTGCGCGCTACAACCCCGCGACCCTCG
AAGTGACGTACCAGGGACGGAACATCGCGCAGGTGCTCGACCTGACGGTGGAGGCGGCCGCGGAGTTCTTCGCGGACACC
CCGGCCGTGGCCCGCAGCCTGCGGACCCTCCTCGACGTGGGTCTCGGCTATCTGCGCCTCGGGCAGCCCGCGACGGAGCT
CTCGGGTGGCGAGGCCCAACGCATCAAGCTGGCGAGCGAGTTGCAGCGCGTCCGGCGCGGCCACACGCTCTATCTCCTGG
ACGAGCCGACGACCGGGCTGCATCCGGCCGACGTGGAGGTCCTGATGCGCCAGCTGCACGGCTTGGTCGACGCGGGCCAC
TCGGTGGTGGTCGTCGAGCACGACATGGCGGTGGTGGCCGGCGCGGACTGGGTGATCGACCTGGGCCCCGGCGGCGGCGA
CGAGGGCGGCCGCGTGGTCGCTTCGGGGCCGCCCGGTGCGGTGGCTACGGCCAAGGGCAGCCGGACGGCACCGTATCTGG
CGCGGGCGACCGGCGGGGACCGCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(482-697)

UvrA DNA-binding domain (UvrA_DNA-bind)

(159-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

41.81

89.117

0.373
  uvrA Streptococcus pneumoniae TIGR4

41.81

89.117

0.373
  uvrA Streptococcus pneumoniae D39

41.81

89.117

0.373