Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   ABXJ52_RS16755 Genome accession   NZ_CP160402
Coordinates   3734787..3735440 (+) Length   217 a.a.
NCBI ID   WP_367043276.1    Uniprot ID   -
Organism   Streptomyces sp. Je 1-332     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3729787..3740440
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXJ52_RS16735 (ABXJ52_16735) - 3730832..3731968 (-) 1137 WP_367043267.1 YncE family protein -
  ABXJ52_RS16740 (ABXJ52_16740) - 3731965..3732567 (-) 603 WP_367043269.1 ankyrin repeat domain-containing protein -
  ABXJ52_RS16745 (ABXJ52_16745) - 3732630..3733187 (-) 558 WP_367043271.1 heme-binding protein -
  ABXJ52_RS16750 (ABXJ52_16750) - 3733507..3734790 (+) 1284 WP_367043273.1 sensor histidine kinase -
  ABXJ52_RS16755 (ABXJ52_16755) vraR 3734787..3735440 (+) 654 WP_367043276.1 response regulator transcription factor Regulator
  ABXJ52_RS16760 (ABXJ52_16760) - 3735484..3735981 (+) 498 WP_367043278.1 hypothetical protein -
  ABXJ52_RS16765 (ABXJ52_16765) - 3736679..3737359 (-) 681 WP_367043280.1 pentapeptide repeat-containing protein -
  ABXJ52_RS16770 (ABXJ52_16770) - 3737497..3738687 (+) 1191 WP_367043282.1 FAD-dependent oxidoreductase -
  ABXJ52_RS16775 (ABXJ52_16775) - 3738776..3739801 (+) 1026 WP_367043284.1 zinc-binding dehydrogenase -
  ABXJ52_RS16780 (ABXJ52_16780) - 3739815..3740297 (-) 483 WP_367043286.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 22839.45 Da        Isoelectric Point: 5.6445

>NTDB_id=918267 ABXJ52_RS16755 WP_367043276.1 3734787..3735440(+) (vraR) [Streptomyces sp. Je 1-332]
MTPHGAPPVPPVRLLVCDDHIVVRAGLLALLGSAPDIEVVGEAGTGEEAIALAAKLAPDVVLMDLQLGEGMDGVEATRRI
TSVAAPAPHVLVLTTYDTDADITRAIEAGATGYLLKAERPEELFAAIHAAAQGRTTLSPPVASRVMARMRKPLPTLTDRE
LDILGQLSQGLGNREIARALFISEATVKTHLGRIYDKLGVDTRAGAVAVAKEQRLLP

Nucleotide


Download         Length: 654 bp        

>NTDB_id=918267 ABXJ52_RS16755 WP_367043276.1 3734787..3735440(+) (vraR) [Streptomyces sp. Je 1-332]
ATGACGCCCCACGGCGCGCCCCCGGTCCCCCCGGTCCGCCTCCTGGTCTGCGACGACCACATCGTCGTACGGGCCGGACT
GCTCGCCCTGCTGGGCAGCGCGCCGGACATCGAGGTGGTCGGCGAGGCGGGCACCGGCGAGGAGGCGATCGCGCTCGCCG
CGAAGCTGGCCCCGGACGTGGTCCTGATGGACCTGCAGCTGGGCGAGGGGATGGACGGTGTGGAGGCGACACGCCGCATC
ACGTCCGTCGCCGCCCCCGCGCCCCACGTCCTGGTCCTGACGACGTACGACACGGACGCGGACATCACCCGCGCCATCGA
GGCGGGCGCGACCGGCTATCTCCTGAAGGCGGAACGCCCCGAGGAGCTCTTCGCCGCGATCCATGCCGCCGCGCAGGGCC
GCACCACGCTCTCCCCGCCGGTCGCCTCCCGCGTGATGGCTCGCATGCGCAAGCCGCTGCCGACCCTCACCGACCGCGAG
CTCGACATCCTCGGCCAGCTCTCCCAGGGCCTCGGCAACCGGGAGATCGCGCGGGCGCTGTTCATCAGCGAGGCCACGGT
GAAGACACACCTGGGCCGGATCTACGACAAGCTCGGGGTGGACACGAGGGCGGGCGCGGTGGCGGTGGCCAAGGAGCAGC
GGCTACTGCCCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(15-127)

Bacterial regulatory proteins, luxR family (GerE)

(155-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

40.67

96.313

0.392