Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   ABXJ52_RS12085 Genome accession   NZ_CP160402
Coordinates   2601412..2602080 (-) Length   222 a.a.
NCBI ID   WP_367041751.1    Uniprot ID   -
Organism   Streptomyces sp. Je 1-332     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2596412..2607080
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXJ52_RS12070 (ABXJ52_12070) - 2597285..2599276 (+) 1992 WP_367041745.1 dipeptide/oligopeptide/nickel ABC transporter permease/ATP-binding protein -
  ABXJ52_RS12075 (ABXJ52_12075) - 2599273..2600325 (+) 1053 WP_367041748.1 ABC transporter ATP-binding protein -
  ABXJ52_RS12080 (ABXJ52_12080) - 2600322..2601257 (+) 936 WP_367041749.1 dihydrodipicolinate synthase family protein -
  ABXJ52_RS12085 (ABXJ52_12085) vraR 2601412..2602080 (-) 669 WP_367041751.1 response regulator transcription factor Regulator
  ABXJ52_RS12090 (ABXJ52_12090) - 2602077..2603264 (-) 1188 WP_367048998.1 histidine kinase -
  ABXJ52_RS12095 (ABXJ52_12095) - 2603392..2605479 (-) 2088 WP_367041753.1 MMPL family transporter -
  ABXJ52_RS12100 (ABXJ52_12100) - 2605653..2606348 (-) 696 WP_367049000.1 TerB family tellurite resistance protein -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 23360.94 Da        Isoelectric Point: 4.6548

>NTDB_id=918255 ABXJ52_RS12085 WP_367041751.1 2601412..2602080(-) (vraR) [Streptomyces sp. Je 1-332]
MTIRVLLADDQTLVRAAFAMLVESAPDMEVVGQAGTGRAAVDLARSERADLIVMDIRMPDLDGIEATRLLAEDEDLAGVK
VLMLTTYDTDEHVVDALRAGASGFLVKDTKPGELLEAIRTVAAGESLLSPGPTSRLIARVLRAPEPPAAGPGGPEGLSER
ERQVLALVARGLNNAEIAELLGLSPLTAKTHVSRIMGKLGARDRAQLVIVAYESGLVRPGVG

Nucleotide


Download         Length: 669 bp        

>NTDB_id=918255 ABXJ52_RS12085 WP_367041751.1 2601412..2602080(-) (vraR) [Streptomyces sp. Je 1-332]
ATGACGATCCGTGTACTGCTCGCCGACGACCAGACGCTGGTGCGGGCCGCGTTCGCGATGCTGGTCGAGTCCGCGCCGGA
CATGGAGGTGGTGGGGCAGGCGGGGACGGGGCGGGCGGCGGTCGATCTCGCCCGCTCGGAGCGGGCGGATCTCATCGTGA
TGGACATCCGGATGCCGGACCTGGACGGGATCGAGGCGACGCGGCTGCTCGCCGAGGACGAGGATCTGGCTGGGGTGAAG
GTGTTGATGCTGACGACTTATGACACGGATGAGCATGTCGTTGATGCGCTTCGGGCGGGGGCTTCGGGGTTCTTGGTGAA
GGACACGAAGCCGGGGGAGTTGTTGGAGGCGATCCGTACGGTGGCGGCGGGGGAGTCCCTGCTTTCGCCGGGCCCGACTT
CTCGGTTGATCGCTCGGGTGCTGCGGGCGCCGGAGCCTCCGGCTGCGGGGCCGGGAGGTCCCGAGGGGCTCTCGGAGCGG
GAGCGGCAGGTTCTCGCGCTGGTCGCGCGGGGGCTCAACAATGCTGAGATCGCTGAGTTGTTGGGGCTGAGCCCCCTGAC
CGCGAAGACCCATGTCAGCCGGATCATGGGGAAGCTGGGGGCGAGGGATCGGGCGCAGCTGGTGATTGTGGCTTATGAGT
CGGGGTTGGTGCGGCCGGGGGTGGGTTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(157-211)

Response regulator receiver domain (Response_reg)

(5-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

37.615

98.198

0.369