Detailed information NTG0918249

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: VNN42_RS04720
• Genome accession: NZ_CP141691
• Coordinates: 955120..957366 (-)
• Length: 748 a.a.
• NCBI ID: WP_206887895.1
• Uniprot ID: -
• Organism: Lactococcus petauri strain UCD-BR1
• Function: degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 950120..962366

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VNN42_RS04695 (VNN42_04695)	fabZ	950602..951060 (+)	459	WP_003134189.1	3-hydroxyacyl-ACP dehydratase FabZ	-
VNN42_RS04700 (VNN42_04700)	uvrB	951087..953075 (-)	1989	WP_206887891.1	excinuclease ABC subunit UvrB	-
VNN42_RS04705 (VNN42_04705)	-	953072..953527 (-)	456	WP_019292956.1	RNA pyrophosphohydrolase	-
VNN42_RS04710 (VNN42_04710)	def	953632..954258 (+)	627	WP_017370260.1	peptide deformylase	-
VNN42_RS04715 (VNN42_04715)	-	954631..955064 (-)	434	Protein_933	HD domain-containing protein	-
VNN42_RS04720 (VNN42_04720)	clpC	955120..957366 (-)	2247	WP_206887895.1	ATP-dependent Clp protease ATP-binding subunit	Regulator
VNN42_RS04725 (VNN42_04725)	rpoD	957584..958708 (-)	1125	WP_306723678.1	RNA polymerase sigma factor RpoD	-
VNN42_RS04730 (VNN42_04730)	-	958823..958981 (-)	159	Protein_936	translation initiation factor IF-2 N-terminal domain-containing protein	-
VNN42_RS04735 (VNN42_04735)	dnaG	959002..960888 (-)	1887	WP_206887898.1	DNA primase	-

Sequence

Protein

• Length: 748 a.a.
• Molecular weight: 83442.41 Da
• Isoelectric Point: 4.7218

>NTDB_id=918249 VNN42_RS04720 WP_206887895.1 955120..957366(-) (clpC) [Lactococcus petauri strain UCD-BR1]
MLCQNCKINEATIHLYTNVNGQRKQVDLCQNCYQIMKSGGQESLFAGATNISNNDDPFNPFPDIFQALHGNDQGRTMTPP
TQAGGRGPGGPQNPRGSQAPKGLLEEFGVNITDAARRGEIDPVIGRDSEITRVIEILNRRTKNNPVLIGEPGVGKTAVVE
GLAQKIVDGDVPQKLQNKEVIRLDVVSLVQGTGVRGQFEERMQKLMEEIRKRDDVILFIDEIHEIVGAGSAGEGNMDAGN
ILKPALARGELQLVGATTLNEYRIIEKDAALERRMQPVKVDEPSVDETITILRGIQKRYEDYHHVKYSDEAILAAANLSN
RYIQDRFLPDKAIDLLDEAGSKKNLTLKFVDPEDIKKRIEQAEVQKNEAMQREDFEKAAHFRDQIAKLRELQSHEISDTD
MPNITEKDIEAIVEEKTHIPVGDLKEKEQTQLINLAEDLKEHVIGQDEAIDKISKAVRRSRVGLGKPNRPIGSFLFVGPT
GVGKTELAKQLAYELFGSRDSMIRFDMSEYMEKHSVAKLIGAPPGYVGYEEAGQLTERVRRNPYSLILLDEIEKAHPDVM
HMFLQILDDGRLTDAQGRTVSFKDAIIIMTSNAGTGKVEASVGFGAAREGRTNSVLGELGNFFSPEFMNRFDAIIEFSAL
SKENLLKIVDLMLDEVNAQIAQNDIHLDVTQAVKEKLVDLGYDPKMGARPLRRTIQDNIEDAIADFYIEHPEYKELLADL
VDDKIVIVNKPEEVKDTADTSDNEDEEK

Nucleotide

• Length: 2247 bp

>NTDB_id=918249 VNN42_RS04720 WP_206887895.1 955120..957366(-) (clpC) [Lactococcus petauri strain UCD-BR1]
ATGCTCTGCCAAAATTGTAAAATAAACGAAGCGACAATTCACCTTTATACAAATGTGAATGGCCAGCGTAAGCAAGTGGA
TCTATGCCAAAATTGTTATCAAATTATGAAATCAGGTGGTCAAGAAAGCTTGTTTGCTGGAGCTACAAATATTTCGAATA
ATGATGATCCCTTTAATCCATTTCCAGATATTTTCCAAGCCTTACATGGTAATGATCAAGGTCGGACAATGACACCTCCA
ACACAAGCGGGGGGTCGAGGTCCAGGAGGTCCACAAAACCCTCGGGGAAGTCAAGCACCTAAAGGACTTCTTGAAGAATT
CGGAGTCAACATTACTGATGCTGCACGTCGTGGAGAAATAGATCCTGTTATTGGACGAGATTCTGAAATTACACGTGTTA
TCGAAATTTTGAATCGTCGAACAAAAAATAATCCTGTTCTTATTGGTGAACCTGGTGTTGGTAAAACAGCAGTTGTTGAA
GGCTTAGCCCAAAAAATAGTTGATGGTGATGTACCACAAAAACTACAAAATAAAGAAGTTATTCGTCTTGATGTTGTCAG
TCTCGTCCAAGGTACTGGTGTGCGCGGGCAATTTGAAGAGCGTATGCAAAAACTGATGGAAGAGATTCGTAAACGTGATG
ACGTTATCCTCTTCATTGATGAAATTCATGAGATTGTGGGCGCAGGCTCTGCTGGGGAAGGAAATATGGATGCTGGAAAT
ATCCTTAAACCGGCTTTAGCGCGTGGAGAACTCCAACTTGTTGGAGCAACAACCCTCAATGAATATCGAATTATTGAAAA
AGATGCAGCGCTTGAGCGCCGGATGCAACCTGTTAAAGTTGATGAACCTTCTGTAGATGAGACTATCACAATCTTACGTG
GTATTCAAAAACGTTATGAAGATTATCATCATGTAAAATACTCAGATGAAGCAATCTTAGCTGCTGCAAATCTGTCTAAC
CGTTATATTCAGGACCGTTTCCTTCCCGATAAAGCAATTGACTTGCTGGACGAAGCGGGTTCGAAAAAGAATCTGACACT
CAAATTTGTTGATCCTGAGGACATAAAGAAACGTATTGAGCAAGCAGAGGTGCAAAAAAACGAAGCCATGCAACGTGAAG
ATTTTGAGAAAGCGGCCCATTTCCGTGATCAAATCGCTAAGCTTCGTGAGCTTCAAAGTCATGAAATCTCAGATACTGAC
ATGCCAAATATCACAGAAAAAGATATTGAAGCAATTGTTGAAGAAAAGACACATATACCTGTAGGTGATTTGAAAGAAAA
AGAACAAACACAGCTCATTAATCTAGCTGAAGACTTGAAAGAACATGTTATCGGGCAAGATGAAGCGATTGATAAAATTT
CTAAAGCTGTGCGTCGTTCGCGTGTCGGACTTGGAAAGCCTAATCGTCCTATCGGTTCATTCCTCTTTGTTGGACCTACT
GGTGTAGGGAAGACCGAACTTGCAAAACAATTGGCTTATGAGCTTTTTGGCTCAAGAGATAGCATGATTCGCTTTGACAT
GTCGGAATACATGGAAAAACATAGTGTGGCTAAGTTGATTGGTGCTCCTCCAGGATATGTGGGGTATGAAGAAGCAGGTC
AGTTGACAGAACGTGTGCGCCGTAACCCATACAGCTTAATTTTATTGGATGAGATTGAGAAAGCTCACCCGGATGTAATG
CATATGTTCTTGCAAATTCTTGATGACGGGCGTTTGACAGATGCGCAAGGTCGTACAGTTTCCTTCAAAGATGCCATCAT
CATTATGACATCGAATGCTGGTACAGGTAAGGTTGAAGCAAGTGTTGGTTTTGGCGCTGCACGTGAAGGACGTACGAATT
CAGTGCTTGGAGAGTTGGGTAATTTCTTCAGTCCAGAATTCATGAACCGTTTTGATGCTATCATTGAATTCTCAGCATTG
AGCAAAGAAAACTTGCTTAAGATTGTAGATTTAATGTTGGATGAAGTAAATGCTCAAATCGCTCAAAATGATATTCATCT
TGACGTCACACAGGCGGTTAAAGAAAAACTCGTTGATCTGGGCTACGATCCGAAAATGGGAGCACGCCCATTACGTCGTA
CCATCCAGGATAATATCGAGGATGCTATTGCTGATTTTTATATCGAGCATCCTGAGTATAAAGAATTACTTGCAGACTTG
GTTGATGATAAGATTGTTATTGTGAATAAGCCTGAAGAAGTAAAAGACACAGCGGATACATCTGATAATGAAGATGAAGA
GAAATAA

Domains

Predicted by InterproScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (640-710)

• AAA lid domain (AAA_lid_9) (284-383)

• AAA domain (Cdc48 subfamily) (AAA_2) (469-634)

• ATPase family associated with various cellular activities (AAA) (AAA) (146-259)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Lactococcus lactis subsp. cremoris KW2	86.497	100	0.865
clpE	Streptococcus mutans UA159	77.543	100	0.785
clpE	Streptococcus pneumoniae TIGR4	77.702	97.727	0.759
clpE	Streptococcus pneumoniae Rx1	77.702	97.727	0.759
clpE	Streptococcus pneumoniae D39	77.702	97.727	0.759
clpE	Streptococcus pneumoniae R6	77.702	97.727	0.759
clpC	Bacillus subtilis subsp. subtilis str. 168	50.514	91.043	0.46
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	47.798	81.952	0.392
clpC	Streptococcus pneumoniae Rx1	47.097	82.888	0.39
clpC	Streptococcus pneumoniae D39	47.097	82.888	0.39
clpC	Streptococcus pneumoniae TIGR4	46.935	82.888	0.389
clpC	Streptococcus mutans UA159	46.688	82.754	0.386
clpC	Streptococcus thermophilus LMD-9	45.847	83.69	0.384
clpC	Streptococcus thermophilus LMG 18311	45.484	82.888	0.377