Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   ABXJ52_RS08895 Genome accession   NZ_CP160402
Coordinates   1902668..1905709 (-) Length   1013 a.a.
NCBI ID   WP_367040704.1    Uniprot ID   -
Organism   Streptomyces sp. Je 1-332     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1897668..1910709
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXJ52_RS08870 (ABXJ52_08870) - 1898639..1899064 (-) 426 WP_367040694.1 Rieske (2Fe-2S) protein -
  ABXJ52_RS08875 (ABXJ52_08875) - 1899270..1900181 (+) 912 WP_367040696.1 carbohydrate kinase -
  ABXJ52_RS08880 (ABXJ52_08880) - 1900224..1901081 (-) 858 WP_367040698.1 helix-turn-helix transcriptional regulator -
  ABXJ52_RS08885 (ABXJ52_08885) - 1901184..1901762 (+) 579 WP_367040700.1 YceI family protein -
  ABXJ52_RS08890 (ABXJ52_08890) - 1901772..1902536 (-) 765 WP_367040702.1 crotonase/enoyl-CoA hydratase family protein -
  ABXJ52_RS08895 (ABXJ52_08895) uvrA 1902668..1905709 (-) 3042 WP_367040704.1 excinuclease ABC subunit UvrA Machinery gene
  ABXJ52_RS08900 (ABXJ52_08900) - 1905933..1906616 (+) 684 WP_367040705.1 maleylpyruvate isomerase family mycothiol-dependent enzyme -
  ABXJ52_RS08905 (ABXJ52_08905) - 1906627..1907283 (+) 657 WP_367040706.1 MBL fold metallo-hydrolase -
  ABXJ52_RS08910 (ABXJ52_08910) aroQ 1907315..1907776 (-) 462 WP_367040707.1 type II 3-dehydroquinate dehydratase -
  ABXJ52_RS08915 (ABXJ52_08915) - 1907856..1909166 (+) 1311 WP_367040709.1 MFS transporter -
  ABXJ52_RS08920 (ABXJ52_08920) - 1909178..1910275 (-) 1098 WP_367040711.1 ionic transporter y4hA -

Sequence

Protein


Download         Length: 1013 a.a.        Molecular weight: 110853.99 Da        Isoelectric Point: 7.7155

>NTDB_id=918246 ABXJ52_RS08895 WP_367040704.1 1902668..1905709(-) (uvrA) [Streptomyces sp. Je 1-332]
MADRLIVRGAREHNLKNVSLDLPRDSLIVFTGLSGSGKSSLAFDTIFAEGQRRYVESLSSYARQFLGQMDKPDVDFIEGL
SPAVSIDQKSTSRNPRSTVGTITEVYDYLRLLFARIGKPHCPECGRPIARQSPQAIVDKVLELPEGSRFQVLSPLVRERK
GEFVDLFADLQTKGYSRARVDGETIQLSEPPTLKKQEKHTIEVVIDRLTVKDSAKRRLTDSVETALGLAGGMVVLDFVDL
PEDDPERERMYSEHLYCAYDDLSFEELEPRSFSFNSPFGACPDCTGIGTRMEVDPELIVPDEDKSLDEGAIHPWSHGHTK
EYFGRLVGALADALGFSTDMPWAGLPQRARKALLNGHKTQIEVRYRNRYGRERVYTTAFEGAVPFVKRRHSEAESDASRE
RFEGYMREVPCPTCEGTRLKPIVLAVSVMGKSIAEVSAMSISDCADFLAELRLGARDKKIAERVLKEVNERLRFLVDVGL
DYLSLNRAAGTLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNHRLIETLVRLRDMGNTLIVVEHDEDTIKVAD
WVVDIGPGAGEHGGKVVHSGSMKELLTNSKSITGQYLSGKRSIPVPDIRRPADPTRQLTVHGARENNLQDIDVSFPLGVL
TAVTGVSGSGKSTLVNDILYTHLARELNGARSVPGRHTRVEGDDLVDKVVHVDQSPIGRTPRSNPATYTGVFDHVRRLFA
ETMEAKVRGYLPGRFSFNVKGGRCENCSGDGTIKIEMNFLPDVYVPCEVCHGARYNRETLDVHYKGKSIAEVLDMPIEEA
LDFFEAVPAISRHLRTLNDVGLGYVRLGQSAPTLSGGEAQRVKLASELQKRSTGRTVYVLDEPTTGLHFEDISKLISVLS
GLVDKGNTVIVIEHNLDVIKTADWVVDMGPEGGNGGGLVVAEGTPEEVAGITTSHTGKFLRDILATDRITDGASQGRKRA
VSSAAKKSTAAKATAKTATAKKAASKAPVKKAAAKTATAKKAPAKKATRARKA

Nucleotide


Download         Length: 3042 bp        

>NTDB_id=918246 ABXJ52_RS08895 WP_367040704.1 1902668..1905709(-) (uvrA) [Streptomyces sp. Je 1-332]
GTGGCCGACCGTCTCATCGTCCGTGGCGCGCGCGAGCACAATCTCAAGAACGTCTCGCTCGACCTCCCGCGCGACTCCCT
CATCGTCTTCACCGGGCTCTCCGGGTCGGGCAAGTCCTCGCTCGCGTTCGACACGATCTTCGCCGAGGGCCAGCGGCGGT
ACGTGGAGTCGCTGTCCTCGTACGCCCGGCAGTTCCTCGGTCAGATGGACAAGCCGGACGTCGACTTCATCGAGGGCCTC
TCGCCCGCGGTCTCCATCGACCAGAAGTCGACCTCGCGCAACCCGCGCTCCACGGTCGGCACGATCACCGAGGTCTACGA
CTACCTTCGCCTGCTCTTCGCGCGCATCGGCAAGCCGCACTGTCCCGAGTGCGGGCGCCCCATCGCCCGGCAGTCGCCGC
AGGCCATCGTCGACAAGGTCCTGGAGCTGCCCGAGGGCAGCCGCTTCCAGGTCCTCTCGCCGCTGGTGCGCGAGCGCAAG
GGTGAGTTCGTCGACCTCTTCGCCGACCTCCAGACCAAGGGCTACAGCCGCGCGCGGGTCGACGGCGAGACGATCCAGCT
CTCCGAGCCGCCCACGCTGAAGAAGCAGGAGAAGCACACCATCGAGGTGGTCATCGACCGTCTCACGGTGAAGGACTCCG
CCAAGCGCCGCCTGACCGACTCCGTGGAGACCGCGCTCGGTCTCGCCGGAGGCATGGTCGTACTCGACTTCGTCGACCTC
CCCGAGGACGACCCCGAGCGCGAGCGCATGTACTCGGAGCACCTGTACTGCGCGTACGACGACCTGTCCTTCGAGGAGCT
CGAGCCGCGCTCCTTCTCCTTCAACTCGCCCTTCGGCGCCTGCCCGGACTGCACCGGCATCGGCACGCGCATGGAGGTCG
ACCCCGAGCTGATCGTCCCGGACGAGGACAAGTCGCTCGACGAGGGCGCCATCCACCCCTGGTCGCACGGCCACACCAAG
GAGTACTTCGGCCGGCTCGTCGGCGCGCTCGCCGATGCCCTCGGCTTCTCCACCGACATGCCCTGGGCCGGCCTCCCGCA
GCGCGCCAGGAAGGCCCTCCTGAACGGCCACAAGACGCAGATCGAGGTGCGCTACCGCAACCGGTACGGCCGCGAGCGGG
TCTACACCACCGCGTTCGAAGGCGCCGTCCCCTTCGTCAAGCGCCGGCACAGCGAGGCCGAGAGCGATGCGAGCCGCGAG
CGCTTCGAGGGCTACATGCGCGAGGTGCCGTGCCCCACCTGTGAGGGCACGCGTCTCAAGCCGATCGTCCTGGCCGTCTC
GGTCATGGGGAAGTCCATCGCCGAGGTCTCGGCGATGTCCATCAGCGACTGCGCGGATTTCCTCGCCGAGCTGCGGCTTG
GCGCCCGCGACAAGAAGATCGCCGAGCGCGTCCTGAAGGAGGTCAACGAACGGCTGCGCTTCCTGGTCGACGTCGGCCTG
GACTATCTCTCCCTGAACCGCGCGGCGGGCACCCTCTCCGGAGGCGAGGCCCAGCGCATCCGCCTGGCCACGCAGATCGG
CTCGGGCCTCGTCGGAGTCCTGTACGTACTGGACGAGCCCTCCATCGGCCTGCACCAGCGCGACAACCACCGCCTGATCG
AGACCCTCGTGCGCCTGCGCGACATGGGCAACACGCTCATCGTCGTCGAGCACGACGAGGACACCATCAAGGTCGCCGAC
TGGGTCGTGGACATCGGCCCCGGCGCGGGCGAGCACGGCGGCAAGGTCGTGCACAGCGGCTCCATGAAGGAGCTGCTGAC
CAACTCCAAGTCGATCACCGGCCAGTATCTGTCGGGCAAGCGGTCCATCCCGGTGCCGGACATCCGCCGCCCGGCGGACC
CCACCCGTCAGCTGACGGTGCACGGCGCCCGGGAGAACAACCTCCAGGACATCGACGTCTCCTTCCCGCTCGGCGTCCTC
ACCGCCGTCACGGGTGTCTCGGGCTCCGGCAAGTCGACGCTGGTCAACGACATCCTCTACACGCACCTGGCGCGCGAGCT
GAACGGCGCCCGGTCCGTCCCCGGACGGCACACGCGCGTGGAGGGTGACGACCTCGTCGACAAGGTCGTGCACGTCGACC
AGTCGCCCATCGGCCGCACGCCCCGGTCGAACCCGGCGACGTACACCGGAGTCTTCGACCACGTCCGCCGGCTGTTCGCG
GAGACGATGGAGGCGAAGGTCCGGGGCTATCTCCCCGGCCGCTTCTCCTTCAACGTCAAGGGCGGTCGCTGCGAGAACTG
CTCCGGCGACGGCACGATCAAGATCGAGATGAACTTCCTGCCGGATGTGTACGTCCCCTGCGAGGTCTGCCACGGGGCGC
GCTACAACCGCGAGACGCTGGACGTCCACTACAAGGGCAAGTCCATCGCCGAGGTCCTGGACATGCCGATCGAGGAAGCG
CTCGACTTCTTCGAGGCGGTGCCGGCCATCTCCCGCCACCTGCGCACGCTCAACGACGTGGGCCTCGGGTACGTCAGGCT
CGGCCAGTCCGCGCCGACGCTCTCCGGCGGTGAGGCCCAGCGCGTGAAGCTGGCATCCGAGCTACAGAAGCGCTCGACGG
GCCGGACCGTCTACGTCCTGGACGAGCCGACCACTGGTCTGCACTTCGAGGACATCAGCAAGCTGATCTCGGTCCTGTCC
GGCCTCGTCGACAAGGGCAACACGGTCATCGTCATCGAGCACAACCTCGATGTCATCAAGACCGCGGACTGGGTCGTCGA
CATGGGCCCCGAGGGTGGCAACGGCGGCGGTCTTGTCGTCGCCGAGGGCACGCCCGAGGAGGTCGCCGGAATCACGACGA
GCCACACGGGCAAGTTCCTGCGGGACATCCTCGCGACGGACCGGATCACTGACGGGGCCTCGCAGGGGCGTAAGCGGGCG
GTCTCCTCGGCGGCGAAGAAGTCGACGGCGGCCAAGGCCACGGCCAAGACGGCTACCGCGAAGAAGGCGGCTTCCAAGGC
TCCGGTCAAGAAGGCCGCCGCGAAGACAGCGACGGCCAAGAAGGCCCCGGCCAAGAAGGCCACCAGGGCTCGTAAGGCCT
GA

Domains

Predicted by InterProScan.

UvrA interaction domain (UvrA_inter)

(131-238)

UvrA DNA-binding domain (UvrA_DNA-bind)

(294-403)

ABC transporter (ABC_tran)

(628-864)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

57.037

93.287

0.532
  uvrA Streptococcus pneumoniae TIGR4

57.037

93.287

0.532
  uvrA Streptococcus pneumoniae D39

57.037

93.287

0.532