Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   ABXJ52_RS02380 Genome accession   NZ_CP160402
Coordinates   506386..507069 (-) Length   227 a.a.
NCBI ID   WP_367038852.1    Uniprot ID   -
Organism   Streptomyces sp. Je 1-332     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 501386..512069
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXJ52_RS02360 (ABXJ52_02360) - 502713..504071 (+) 1359 WP_367038847.1 acyclic terpene utilization AtuA family protein -
  ABXJ52_RS02365 (ABXJ52_02365) - 504098..504418 (+) 321 WP_367038848.1 DUF4387 domain-containing protein -
  ABXJ52_RS02370 (ABXJ52_02370) - 504411..505571 (+) 1161 WP_367038849.1 alpha-hydroxy-acid oxidizing protein -
  ABXJ52_RS02375 (ABXJ52_02375) - 505568..506305 (+) 738 WP_367038851.1 SDR family oxidoreductase -
  ABXJ52_RS02380 (ABXJ52_02380) vraR 506386..507069 (-) 684 WP_367038852.1 response regulator transcription factor Regulator
  ABXJ52_RS02385 (ABXJ52_02385) - 507069..508313 (-) 1245 WP_367038854.1 histidine kinase -
  ABXJ52_RS02390 (ABXJ52_02390) - 508481..509842 (+) 1362 WP_367038855.1 citrate:proton symporter -
  ABXJ52_RS02395 (ABXJ52_02395) - 509866..510720 (+) 855 WP_367038856.1 fumarylacetoacetate hydrolase family protein -
  ABXJ52_RS02400 (ABXJ52_02400) - 510919..511736 (+) 818 WP_367038206.1 IS5 family transposase -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 24844.82 Da        Isoelectric Point: 6.9812

>NTDB_id=918237 ABXJ52_RS02380 WP_367038852.1 506386..507069(-) (vraR) [Streptomyces sp. Je 1-332]
MFRVLIADDHAAFRSGLRAILGTQPDFECVAEVAEGRAAVAETIRLRPDLAILDVRMPKLDGLAAAAEIVASGLTGVRML
MLTTYDSDEYLHRALTTGVHGFVLKSLPPEELIAAIRATARGDAYVDPAVVRRLRPRIADALAPVEASVPKLPPGMARLT
AREHEVFLLLAEGFTNPEIGVHLHIGDETVKTHVSRVLTKLRLRDRVHAVRYAYRHGIVQVGDELDI

Nucleotide


Download         Length: 684 bp        

>NTDB_id=918237 ABXJ52_RS02380 WP_367038852.1 506386..507069(-) (vraR) [Streptomyces sp. Je 1-332]
ATGTTCCGAGTACTGATAGCCGACGACCACGCTGCCTTCCGCTCCGGCCTGCGCGCGATCCTCGGCACGCAGCCGGACTT
CGAATGTGTCGCCGAGGTCGCCGAGGGCCGCGCAGCGGTCGCCGAAACCATCCGGTTGCGCCCCGACCTGGCGATCCTGG
ACGTCCGGATGCCCAAGCTCGACGGTCTGGCCGCGGCCGCGGAGATCGTGGCCTCCGGGCTCACGGGCGTGCGCATGCTG
ATGCTCACCACCTATGACAGCGACGAGTATCTGCATCGCGCGCTCACCACCGGCGTCCACGGCTTCGTACTGAAGAGCCT
GCCGCCGGAGGAACTCATCGCCGCCATCAGGGCGACGGCCCGCGGTGACGCCTACGTCGACCCGGCCGTCGTCCGGCGGC
TGAGGCCTCGCATCGCCGACGCGCTGGCCCCTGTCGAGGCGTCGGTCCCGAAGCTGCCGCCGGGGATGGCACGGCTGACC
GCGCGCGAACACGAAGTCTTCCTGCTGCTCGCGGAGGGTTTCACCAATCCGGAGATCGGCGTGCATCTCCACATCGGCGA
CGAGACGGTCAAGACCCACGTCTCGCGCGTACTCACGAAGCTGCGCCTGCGCGACCGGGTGCACGCCGTCCGCTACGCCT
ATCGGCACGGCATCGTCCAGGTCGGCGACGAACTGGACATATAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(159-213)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

37.9

96.476

0.366