Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   AB1F75_RS20515 Genome accession   NZ_CP160396
Coordinates   3983534..3983764 (-) Length   76 a.a.
NCBI ID   WP_003243417.1    Uniprot ID   A0ABU0VCT2
Organism   Bacillus subtilis subsp. subtilis strain BSP1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3978534..3988764
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB1F75_RS20505 (AB1F75_20505) spoVT 3979259..3979795 (-) 537 WP_003218365.1 stage V sporulation protein T -
  AB1F75_RS20510 (AB1F75_20510) mfd 3979931..3983464 (-) 3534 WP_015253006.1 transcription-repair coupling factor -
  AB1F75_RS20515 (AB1F75_20515) subA/fin 3983534..3983764 (-) 231 WP_003243417.1 anti-sigma-F factor Fin Machinery gene
  AB1F75_RS20520 (AB1F75_20520) pth 3983824..3984390 (-) 567 WP_003226727.1 aminoacyl-tRNA hydrolase -
  AB1F75_RS20525 (AB1F75_20525) rplYB 3984497..3985111 (-) 615 WP_003243443.1 50S ribosomal protein L25/general stress protein Ctc -
  AB1F75_RS20530 (AB1F75_20530) prsS 3985196..3986149 (-) 954 WP_003218353.1 ribose-phosphate diphosphokinase -
  AB1F75_RS20535 (AB1F75_20535) glmU 3986172..3987542 (-) 1371 WP_015382564.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  AB1F75_RS20540 (AB1F75_20540) spoVG 3987735..3988028 (-) 294 WP_003218346.1 septation regulator SpoVG -
  AB1F75_RS20545 (AB1F75_20545) ridA 3988222..3988599 (-) 378 WP_003226738.1 2-iminobutanoate/2-iminopropanoate deaminase -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8847.81 Da        Isoelectric Point: 5.3895

>NTDB_id=918231 AB1F75_RS20515 WP_003243417.1 3983534..3983764(-) (subA/fin) [Bacillus subtilis subsp. subtilis strain BSP1]
MALHYYCRHCGVKVGSLESSMVSTDSLGFQHLTNEERNDMISYKENGDVHVLTICEDCQEALDRNPHYHEYHTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=918231 AB1F75_RS20515 WP_003243417.1 3983534..3983764(-) (subA/fin) [Bacillus subtilis subsp. subtilis strain BSP1]
ATGGCTTTGCATTATTATTGTCGTCATTGCGGAGTGAAAGTAGGCAGTCTCGAATCTTCAATGGTATCGACAGACTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCTTATAAAGAAAATGGAGATGTCCATGTTTTGACGA
TATGTGAAGACTGCCAAGAGGCGCTTGACCGAAATCCGCATTACCACGAATATCACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

100

100

1