Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   AB1F75_RS16610 Genome accession   NZ_CP160396
Coordinates   3213876..3214592 (-) Length   238 a.a.
NCBI ID   WP_003233679.1    Uniprot ID   P39796
Organism   Bacillus subtilis subsp. subtilis strain BSP1     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3208876..3219592
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB1F75_RS16605 (AB1F75_16605) hypO 3213071..3213736 (-) 666 WP_014476144.1 NAD(P)H-dependent oxidoreductase -
  AB1F75_RS16610 (AB1F75_16610) treR 3213876..3214592 (-) 717 WP_003233679.1 trehalose operon repressor Regulator
  AB1F75_RS16615 (AB1F75_16615) treC 3214613..3216301 (-) 1689 WP_015252559.1 alpha,alpha-phosphotrehalase -
  AB1F75_RS16620 (AB1F75_16620) treP 3216372..3217784 (-) 1413 WP_003233682.1 PTS system trehalose-specific EIIBC component -
  AB1F75_RS16625 (AB1F75_16625) - 3217977..3218156 (+) 180 Protein_3268 spore germination protein -
  AB1F75_RS16630 (AB1F75_16630) - 3218418..3218691 (+) 274 Protein_3269 spore gernimation protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27841.82 Da        Isoelectric Point: 7.1736

>NTDB_id=918211 AB1F75_RS16610 WP_003233679.1 3213876..3214592(-) (treR) [Bacillus subtilis subsp. subtilis strain BSP1]
MKVNKFITIYKDIAQQIEGGRWKAEEILPSEHELTAQYGTSRETVRKALHMLAQNGYIQKIRGKGSVVLNREKMQFPVSG
LVSFKELAQTLGKETKTTVHKFGLEPPSELIQKQLRANLDDDIWEVIRSRKIDGEHVILDKDYFFRKHVPHLTKEICENS
IYEYIEGELGLSISYAQKEIVAEPCTDEDRELLDLRGYDHMVVVRNYVFLEDTSLFQYTESRHRLDKFRFVDFARRGK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=918211 AB1F75_RS16610 WP_003233679.1 3213876..3214592(-) (treR) [Bacillus subtilis subsp. subtilis strain BSP1]
ATGAAGGTGAATAAATTCATCACAATTTATAAAGACATCGCACAGCAAATTGAAGGCGGCCGATGGAAAGCGGAGGAGAT
TCTTCCGTCTGAACATGAGTTGACCGCACAGTACGGTACATCAAGAGAAACGGTCCGAAAGGCGCTTCATATGCTCGCGC
AAAACGGTTATATCCAGAAAATCAGGGGAAAAGGCTCCGTCGTGCTCAACCGTGAAAAAATGCAGTTTCCCGTTTCGGGC
CTTGTCAGCTTCAAGGAGCTCGCGCAAACGCTTGGCAAAGAAACGAAAACAACTGTACACAAATTCGGGCTGGAGCCTCC
GTCAGAGCTGATCCAAAAACAGCTCCGGGCCAATCTGGATGACGACATCTGGGAAGTCATCAGGTCTAGAAAGATTGACG
GGGAACATGTGATTTTGGACAAGGATTACTTTTTCAGAAAGCATGTCCCTCACCTGACGAAAGAAATTTGTGAAAACTCC
ATATATGAGTATATAGAAGGAGAGCTCGGTCTTTCGATCAGTTACGCCCAAAAAGAAATTGTCGCCGAGCCGTGTACGGA
CGAGGACAGAGAGCTGCTCGATTTACGCGGCTATGACCATATGGTCGTGGTGAGAAACTACGTCTTTTTGGAGGATACCA
GTTTGTTTCAATATACGGAAAGCAGACACCGTCTCGACAAATTCCGATTTGTTGATTTTGCGCGGCGGGGGAAATGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(8-68)

UTRA domain (UTRA)

(91-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2OGG

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

42.308

98.319

0.416