Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   AB1F75_RS11765 Genome accession   NZ_CP160396
Coordinates   2295091..2295522 (-) Length   143 a.a.
NCBI ID   WP_003231834.1    Uniprot ID   G4NVD0
Organism   Bacillus subtilis subsp. subtilis strain BSP1     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 2290091..2300522
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB1F75_RS11755 (AB1F75_11755) hexA 2291575..2294151 (-) 2577 WP_015252070.1 DNA mismatch repair protein MutS Machinery gene
  AB1F75_RS11760 (AB1F75_11760) cotE 2294284..2294829 (-) 546 WP_003231833.1 outer spore coat protein CotE -
  AB1F75_RS11765 (AB1F75_11765) ymcA 2295091..2295522 (-) 432 WP_003231834.1 regulatory iron-sulfur-containing complex subunit RicA Regulator
  AB1F75_RS11770 (AB1F75_11770) miaB 2295524..2297053 (-) 1530 WP_014664026.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  AB1F75_RS11775 (AB1F75_11775) kbl 2297201..2298379 (-) 1179 WP_015252071.1 glycine C-acetyltransferase -
  AB1F75_RS11780 (AB1F75_11780) tdh 2298392..2299435 (-) 1044 WP_015252072.1 L-threonine 3-dehydrogenase -
  AB1F75_RS11785 (AB1F75_11785) spoVS 2299702..2299962 (-) 261 WP_003154135.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16166.27 Da        Isoelectric Point: 5.0437

>NTDB_id=918167 AB1F75_RS11765 WP_003231834.1 2295091..2295522(-) (ymcA) [Bacillus subtilis subsp. subtilis strain BSP1]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQE
ELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKHSNNSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=918167 AB1F75_RS11765 WP_003231834.1 2295091..2295522(-) (ymcA) [Bacillus subtilis subsp. subtilis strain BSP1]
ATGACGCTCTACTCAAAAAAAGACATTGTGCAGCAGGCACGAAACCTTGCAAAAATGATCTCTGAAACAGAAGAGGTTGA
TTTTTTCAAACGGGCTGAAGCGCAAATCAATGAGAATGACAAAGTGTCCACAATCGTTAATCAGATTAAAGCCCTGCAAA
AGCAGGCTGTCAATCTGAAGCATTATGAAAAGCATGAAGCGCTCAAACAAGTAGAAGCAAAAATTGACGCGCTGCAAGAA
GAGCTTGAAGAGATTCCTGTTATCCAGGAATTCAGAGACTCGCAGATGGAAGTAAATGACCTATTGCAGCTCGTTGCACA
CACCATTTCCAACCAAGTCACAAATGAAATCATCACATCAACCGGAGGCGACCTGCTGAAAGGGGAAACCGGTTCAAAGG
TGAAGCATTCAAATAACAGCTGTTCTCTCTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

100

100

1