Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OCV39_RS01070 Genome accession   NZ_AP025472
Coordinates   234724..235731 (-) Length   335 a.a.
NCBI ID   WP_171756791.1    Uniprot ID   -
Organism   Vibrio cortegadensis strain CECT 7227     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 229724..240731
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV39_RS01040 zapB 229868..230110 (+) 243 WP_017052605.1 cell division protein ZapB -
  OCV39_RS01045 rraA 230246..230788 (-) 543 WP_017052604.1 ribonuclease E activity regulator RraA -
  OCV39_RS01050 - 230866..231783 (-) 918 WP_261888779.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  OCV39_RS01055 hslU 231925..233262 (-) 1338 WP_113797229.1 HslU--HslV peptidase ATPase subunit -
  OCV39_RS01060 hslV 233312..233866 (-) 555 WP_017052601.1 ATP-dependent protease subunit HslV -
  OCV39_RS01065 ftsN 234044..234574 (-) 531 WP_017052600.1 cell division protein FtsN -
  OCV39_RS01070 cytR 234724..235731 (-) 1008 WP_171756791.1 DNA-binding transcriptional regulator CytR Regulator
  OCV39_RS01075 priA 235966..238167 (-) 2202 WP_171756790.1 primosomal protein N' -
  OCV39_RS01080 rpmE 238541..238756 (+) 216 WP_017052597.1 50S ribosomal protein L31 -
  OCV39_RS01085 - 238976..240250 (+) 1275 WP_261888780.1 malic enzyme-like NAD(P)-binding protein -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 36846.41 Da        Isoelectric Point: 5.2650

>NTDB_id=91813 OCV39_RS01070 WP_171756791.1 234724..235731(-) (cytR) [Vibrio cortegadensis strain CECT 7227]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVAIIPDICDPYFTEIIRG
IEDTAMEFDYLVLLGDSGQQKKRESSLVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFDAVNYLTQLGHKRIAQITGPESATLCKFRQQGYQQALRRAGIIMNPTFTVQGDFTFEAGARAVRKLLSLPEAPTA
IFCHNDTMAIGAIQEAKKLGLRVPQDLSFVGFDDIQFSEYCDPPLTTISQPRYEIGRQAVLMMLELLKGNEVSAGSRLLE
TELIVRGSAAPPRMS

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=91813 OCV39_RS01070 WP_171756791.1 234724..235731(-) (cytR) [Vibrio cortegadensis strain CECT 7227]
ATGGCGACAATGAAGGATGTTGCCCAGCTGGCTGGAGTATCAACTGCGACCGTATCACGTGCGTTAATGAATCCGGAAAA
AGTATCATCCTCAACCCGTAAACGTGTTGAAGATGCTGTTTTAGAAGCTGGTTATTCACCGAACTCTTTGGCAAGAAATT
TACGCCGAAATGAATCAAAAACGATTGTCGCCATTATTCCCGACATTTGCGATCCTTACTTTACTGAGATCATACGAGGC
ATAGAAGATACCGCCATGGAGTTTGACTACTTAGTCCTCCTTGGTGACAGTGGGCAACAGAAGAAGCGTGAGTCTTCCCT
TGTAAACCTCGTCTTTACCAAACAAGCCGATGGTATGCTATTGTTGGGGACCGACCTTCCTTTTGATGTCAGTAAACCTG
AACAGAAAAACCTTCCTCCGATGGTCATGGCGTGTGAATTTGCACCAGAACTTGAGCTCCCCACCGTTCATATCGATAAC
TTAACTTCAGCATTTGATGCGGTGAACTATCTCACCCAACTTGGGCACAAGCGTATCGCTCAAATCACAGGGCCAGAATC
GGCAACCTTATGTAAATTCCGTCAACAAGGTTATCAGCAAGCGCTGCGTCGAGCGGGGATCATCATGAATCCAACCTTTA
CGGTACAAGGTGACTTTACGTTTGAAGCGGGGGCAAGGGCTGTGAGAAAGCTACTGTCTCTACCAGAAGCGCCAACCGCT
ATTTTCTGTCATAACGACACCATGGCTATTGGAGCGATTCAAGAAGCGAAAAAACTAGGCTTACGCGTTCCACAAGATCT
CTCTTTTGTTGGCTTTGATGACATTCAATTCTCTGAATATTGCGATCCACCTCTGACGACCATCTCTCAGCCTCGATATG
AAATTGGACGCCAAGCCGTATTGATGATGTTAGAGCTTCTCAAAGGGAACGAAGTCAGTGCTGGTTCAAGGCTCCTTGAG
ACTGAATTGATCGTTCGCGGCAGTGCTGCGCCACCACGAATGAGTTGA

Domains

Predicted by InterproScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-328)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

88.855

99.104

0.881
  cytR Vibrio parahaemolyticus RIMD 2210633

87.387

99.403

0.869

Multiple sequence alignment