Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   OCV39_RS00570 Genome accession   NZ_AP025472
Coordinates   124573..125280 (-) Length   235 a.a.
NCBI ID   WP_261888712.1    Uniprot ID   -
Organism   Vibrio cortegadensis strain CECT 7227     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 119573..130280
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV39_RS00545 - 120719..121213 (+) 495 WP_261888709.1 type II secretion system protein M -
  OCV39_RS00550 - 121215..121979 (+) 765 WP_261888710.1 type II secretion system protein N -
  OCV39_RS00555 cysQ 122147..122974 (-) 828 WP_017052057.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  OCV39_RS00560 nudE 122987..123544 (-) 558 WP_261888711.1 ADP compounds hydrolase NudE -
  OCV39_RS00565 nfuA 123869..124453 (-) 585 WP_029203303.1 Fe-S biogenesis protein NfuA -
  OCV39_RS00570 comF 124573..125280 (-) 708 WP_261888712.1 ComF family protein Machinery gene
  OCV39_RS00575 bioH 125368..126138 (+) 771 WP_261888713.1 pimeloyl-ACP methyl ester esterase BioH -
  OCV39_RS00580 - 126314..126784 (+) 471 WP_029203301.1 hypothetical protein -
  OCV39_RS00585 - 126964..129318 (-) 2355 WP_261888714.1 Tex family protein -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 27251.50 Da        Isoelectric Point: 9.1764

>NTDB_id=91811 OCV39_RS00570 WP_261888712.1 124573..125280(-) (comF) [Vibrio cortegadensis strain CECT 7227]
MLSHWREKTTLLNRLSQCHLCGLNIENRLVTDMWCQHCYQYFQSQPRCLRCGIPTLTTVDQCGNCLSNPPLWHRLYCVND
YTFPTSGYVHQFKYQKKYWFAKNLARLLANNIDQPAPIITGVPLHWQRYIRRGFNQSELLAHYLAKQSPNSIHLKQAFIR
TRSTPAQQGLSKEQRQVNLHQAFQLSRIPKASHVAIVDDVVTTGCTVRHLCKLLLEVGVERIDIYCVCRTPEPAS

Nucleotide


Download         Length: 708 bp        

>NTDB_id=91811 OCV39_RS00570 WP_261888712.1 124573..125280(-) (comF) [Vibrio cortegadensis strain CECT 7227]
ATGTTATCTCATTGGCGAGAAAAAACCACACTCCTCAACCGATTAAGCCAGTGCCATTTGTGCGGGCTCAATATAGAGAA
TCGCTTGGTAACGGACATGTGGTGCCAGCACTGCTATCAATACTTTCAGTCTCAACCCCGCTGCCTACGTTGTGGGATCC
CCACCTTAACGACGGTAGATCAATGCGGTAACTGCTTATCAAACCCACCGTTATGGCACCGCTTATATTGTGTCAATGAT
TACACTTTCCCGACCTCTGGCTACGTTCATCAATTTAAGTATCAAAAGAAATACTGGTTCGCTAAAAACTTGGCTCGACT
ACTCGCTAATAACATTGATCAACCCGCTCCCATCATCACTGGCGTCCCCTTACATTGGCAACGATACATAAGAAGAGGTT
TCAATCAGAGTGAACTGCTCGCTCACTATCTGGCAAAACAATCCCCAAACTCAATCCACCTTAAACAAGCTTTTATTCGC
ACTCGGTCTACCCCCGCACAACAGGGGTTATCTAAAGAGCAGAGGCAAGTGAACCTTCATCAAGCGTTCCAATTATCACG
GATACCAAAGGCTTCTCACGTCGCGATTGTTGATGATGTCGTTACCACAGGATGTACAGTACGACATTTATGTAAATTAC
TACTTGAAGTGGGCGTCGAAAGAATTGATATTTACTGTGTATGCCGTACTCCTGAACCAGCCAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(153-232)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

55.794

99.149

0.553
  comF Vibrio campbellii strain DS40M4

47.131

100

0.489

Multiple sequence alignment