Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   VNN35_RS08970 Genome accession   NZ_CP141687
Coordinates   1811868..1813673 (+) Length   601 a.a.
NCBI ID   WP_165719444.1    Uniprot ID   -
Organism   Lactococcus petauri strain UCD-JR1     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1806868..1818673
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VNN35_RS08950 (VNN35_08950) - 1807017..1807841 (-) 825 WP_019293090.1 Cof-type HAD-IIB family hydrolase -
  VNN35_RS08955 (VNN35_08955) - 1808205..1809626 (+) 1422 WP_019292048.1 NCS2 family permease -
  VNN35_RS08960 (VNN35_08960) - 1809704..1810804 (+) 1101 WP_019293088.1 YdcF family protein -
  VNN35_RS08965 (VNN35_08965) coiA 1810880..1811884 (+) 1005 WP_206888327.1 competence protein CoiA family protein Machinery gene
  VNN35_RS08970 (VNN35_08970) pepF 1811868..1813673 (+) 1806 WP_165719444.1 oligoendopeptidase F Regulator
  VNN35_RS08975 (VNN35_08975) - 1813673..1814356 (+) 684 WP_019292044.1 O-methyltransferase -
  VNN35_RS08980 (VNN35_08980) - 1814454..1815362 (+) 909 WP_019293085.1 peptidyl-prolyl cis-trans isomerase -
  VNN35_RS08985 (VNN35_08985) alaS 1815612..1818230 (+) 2619 WP_206888331.1 alanine--tRNA ligase -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 69700.20 Da        Isoelectric Point: 4.7851

>NTDB_id=918106 VNN35_RS08970 WP_165719444.1 1811868..1813673(+) (pepF) [Lactococcus petauri strain UCD-JR1]
MAKKRDEIAENLTWDLSTVFENDAAWELELKRVSERLGTVKHYEGHLLDSAQSLLEITEIELEISRAVEKVYVYASMKHD
QDTQVSRYQEYEAKATNLYAKLGETFAFYEPEFLALTPERYASFRREEPKLEQYSHMFDRLFAKKEHILSPKEEKLLASA
SEIFGAAAETFEIFDNADIELPMIKDEKGQEVQLTHGNYISLMESKERQVRKAAYQALYSNYEQYQHTYAKTLQTNVKVH
NFKAKMRGYHSARQAALSSNFIPEEVYDKLLESVNKYLHLLHRYIKLREQILGLENDLKMYDVYTPLSDLDYKFNYSEAV
EKAEEVLQIFGPEYANHVKKAFEERWIDVAENSGKRSGAYSGGCYDTNAFMLLNWQETLDDLFTLVHEMGHSMHSTFTRE
NQPYVYGDYPIFLAEIASTTNENILTESLLAESTDEKVRFAILNHWLDGFRGTVFRQSQFAEFEHEIHKADQEGKVLTSE
FMNQLYAGLNEKYYGLAAQENPEIQYEWARIPHFYYNFYVFQYATGFAAATYLAEAIVNGGPDAREKYLTYLKAGSSDYP
LAVIAQAGVDMEETTYLESAFAVFEKRLIELEKLVEKGAHL

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=918106 VNN35_RS08970 WP_165719444.1 1811868..1813673(+) (pepF) [Lactococcus petauri strain UCD-JR1]
ATGGCAAAAAAACGTGATGAAATAGCTGAAAACTTAACTTGGGATTTGTCAACTGTGTTTGAAAACGATGCCGCCTGGGA
ACTAGAACTTAAAAGAGTTTCGGAAAGATTAGGGACGGTAAAGCACTACGAAGGACATCTTCTAGATAGCGCTCAAAGCT
TATTAGAAATCACGGAAATTGAGCTGGAAATCTCGCGTGCTGTGGAGAAGGTTTATGTCTATGCCTCAATGAAACATGAC
CAAGATACGCAAGTGAGTCGTTACCAAGAATACGAAGCCAAAGCCACAAATTTATATGCCAAGCTTGGAGAAACCTTTGC
TTTTTACGAGCCGGAATTCTTAGCTTTAACGCCAGAACGTTATGCAAGCTTTAGAAGAGAAGAACCCAAACTGGAGCAAT
ATTCTCATATGTTTGACCGCCTTTTTGCTAAAAAGGAGCATATCTTAAGTCCAAAAGAGGAAAAACTCTTAGCCAGTGCT
AGTGAGATTTTTGGTGCAGCCGCCGAAACTTTCGAAATTTTTGACAATGCTGATATTGAGCTTCCGATGATTAAAGATGA
AAAAGGGCAGGAAGTACAGCTGACACACGGTAATTATATCTCGCTCATGGAAAGTAAGGAACGTCAGGTGCGAAAGGCAG
CTTATCAAGCCCTTTATAGCAACTATGAACAGTATCAGCACACTTATGCTAAAACGCTACAAACAAATGTAAAAGTCCAT
AATTTTAAGGCGAAGATGCGTGGCTACCATTCAGCCCGTCAAGCAGCTTTATCAAGTAATTTTATTCCGGAAGAAGTTTA
CGATAAGCTTTTGGAGTCGGTTAATAAATATTTGCATCTTTTACATCGTTATATTAAATTGCGTGAGCAAATTTTAGGGT
TAGAGAACGATTTAAAGATGTATGATGTCTATACACCCTTATCGGACTTGGATTATAAGTTTAACTACTCCGAGGCAGTG
GAGAAAGCGGAAGAAGTTCTTCAAATTTTTGGACCTGAATATGCTAACCATGTTAAAAAAGCCTTTGAAGAGCGGTGGAT
TGATGTAGCTGAAAATAGCGGTAAACGTTCGGGTGCTTATTCAGGGGGATGCTATGATACAAATGCTTTTATGCTGTTAA
ACTGGCAAGAAACTTTGGATGATTTGTTCACCTTAGTACATGAAATGGGCCACAGTATGCATTCCACATTTACACGAGAA
AATCAACCTTATGTTTATGGGGACTATCCAATCTTTCTTGCAGAAATTGCTTCAACAACCAATGAGAATATCTTGACTGA
AAGTTTACTTGCGGAGTCGACAGATGAAAAAGTGCGATTTGCTATTTTAAACCACTGGCTTGATGGTTTCCGTGGCACTG
TTTTCCGTCAAAGCCAATTTGCTGAATTTGAACATGAGATTCATAAAGCTGATCAAGAAGGAAAAGTTCTGACTAGCGAA
TTCATGAACCAGCTTTATGCGGGGCTGAATGAAAAATACTACGGTTTAGCTGCTCAGGAAAATCCTGAAATTCAATATGA
GTGGGCTCGCATTCCGCACTTCTATTATAATTTTTATGTCTTCCAATACGCAACAGGATTTGCCGCAGCAACTTATCTTG
CTGAGGCTATCGTTAATGGTGGCCCAGATGCGCGTGAAAAATACCTCACTTATCTCAAAGCAGGATCAAGTGATTATCCG
CTGGCTGTGATTGCTCAAGCAGGTGTGGATATGGAAGAAACAACATATTTAGAATCAGCATTTGCTGTTTTTGAAAAACG
TTTAATTGAGCTAGAAAAATTAGTCGAAAAAGGAGCCCATTTATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-582)

Oligopeptidase F (Peptidase_M3_N)

(112-180)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

64.725

100

0.647