Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   OCV20_RS22095 Genome accession   NZ_AP025471
Coordinates   1222986..1224080 (-) Length   364 a.a.
NCBI ID   WP_048608893.1    Uniprot ID   -
Organism   Vibrio coralliirubri strain DSM 27495     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 1217986..1229080
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV20_RS22075 - 1218706..1219014 (+) 309 WP_082242941.1 DUF1289 domain-containing protein -
  OCV20_RS22080 - 1219148..1219498 (-) 351 WP_050644050.1 HopJ type III effector protein -
  OCV20_RS22085 - 1219694..1220353 (+) 660 WP_086774399.1 PilZ domain-containing protein -
  OCV20_RS22090 luxQ 1220413..1222986 (-) 2574 WP_086774398.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  OCV20_RS22095 luxP 1222986..1224080 (-) 1095 WP_048608893.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  OCV20_RS22100 - 1224389..1224703 (-) 315 WP_086774397.1 GIY-YIG nuclease family protein -
  OCV20_RS22105 - 1224704..1225360 (-) 657 WP_050633162.1 YceH family protein -
  OCV20_RS22110 - 1225417..1225617 (-) 201 WP_017068647.1 hypothetical protein -
  OCV20_RS22115 - 1225813..1226127 (+) 315 WP_004742367.1 DUF496 family protein -
  OCV20_RS22120 - 1226333..1226959 (+) 627 WP_048612896.1 D-Ala-D-Ala carboxypeptidase family metallohydrolase -
  OCV20_RS22125 - 1227126..1227362 (+) 237 WP_048608901.1 hypothetical protein -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 41360.61 Da        Isoelectric Point: 5.0238

>NTDB_id=91809 OCV20_RS22095 WP_048608893.1 1222986..1224080(-) (luxP) [Vibrio coralliirubri strain DSM 27495]
MKRLLMLFGLAVFSASALSHGTHVLNGYWEYQDYLSTFPEQRALTDKMVEAVQNHPVPLRRIQDEPITISVVYPGQQISD
YWVRNIQAFEKRLDRLKIRYQINQVFTRINADLAQQSISLQEAIENKTDYLIFTLDTTRHRKFIEHVLTSTDTKLILQNI
TTPVRAWADRQPFMYVGFDHATGSLKLADYFKQVSPPDSKYSVLYYSQGYISDARGDTFIHEVNTDTNFTLKSSFYTKSN
KDSGYQAAKISIENDKDLDFIYACSTDVALGAMEAIRESGQDILVNGWGGGSAELEAIARGDLDVTVMRMNDDTGIAMAE
AIKWDLAGLEVPTVYSGEFEIVTKEDSPERISELKQRAFRYSGQ

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=91809 OCV20_RS22095 WP_048608893.1 1222986..1224080(-) (luxP) [Vibrio coralliirubri strain DSM 27495]
ATGAAACGTTTACTGATGTTGTTTGGACTTGCCGTATTTTCTGCGTCCGCTCTCTCCCATGGTACTCATGTCCTCAATGG
GTACTGGGAATACCAAGATTATCTTTCCACTTTTCCAGAACAAAGAGCATTGACCGATAAAATGGTCGAGGCTGTACAAA
ATCACCCTGTGCCATTGAGAAGAATCCAAGACGAGCCGATCACGATTTCCGTGGTGTATCCGGGTCAGCAGATCTCGGAT
TACTGGGTTCGTAATATTCAAGCTTTTGAGAAGCGTCTCGATAGGCTGAAGATCCGCTATCAAATAAATCAAGTGTTTAC
CCGTATTAATGCCGATCTCGCGCAACAGAGCATTTCATTGCAAGAAGCGATTGAAAACAAGACGGATTATTTGATTTTCA
CGTTAGATACCACGCGCCACCGCAAGTTTATTGAGCACGTGTTGACCTCTACAGATACTAAGTTGATCCTTCAAAATATC
ACGACGCCAGTGCGAGCTTGGGCGGATAGACAGCCATTTATGTATGTGGGCTTTGACCATGCGACAGGCAGCTTAAAACT
GGCGGACTATTTTAAACAAGTAAGTCCACCAGACAGTAAGTATTCTGTTTTGTATTACTCCCAAGGCTATATCAGTGATG
CGCGTGGGGATACTTTTATCCACGAAGTGAATACGGATACCAACTTTACCCTTAAGTCTTCGTTTTACACAAAATCAAAC
AAAGACAGTGGCTACCAAGCGGCTAAAATCAGCATAGAGAACGATAAGGATCTAGACTTTATCTATGCATGCTCAACGGA
CGTCGCTCTTGGTGCAATGGAAGCGATTCGTGAATCGGGGCAAGACATCTTAGTGAATGGCTGGGGAGGCGGCTCTGCTG
AACTTGAAGCCATTGCAAGGGGTGACCTAGATGTTACTGTCATGCGTATGAACGACGATACGGGCATTGCGATGGCAGAG
GCTATCAAGTGGGATCTAGCCGGTTTGGAAGTGCCTACCGTTTACTCTGGTGAATTTGAAATTGTGACCAAGGAAGATTC
CCCAGAACGTATTTCAGAACTTAAACAGCGAGCATTTAGGTACTCAGGTCAATAA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-322)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

63.115

100

0.635

Multiple sequence alignment