Detailed information    

insolico Bioinformatically predicted

Overview

Name   hdrR   Type   Regulator
Locus tag   AB1F71_RS08645 Genome accession   NZ_CP160386
Coordinates   1752586..1752942 (+) Length   118 a.a.
NCBI ID   WP_002262669.1    Uniprot ID   -
Organism   Streptococcus mutans strain UA159 ykuR deletion     
Function   activate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1747586..1757942
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB1F71_RS08630 (AB1F71_08630) - 1749938..1750159 (+) 222 WP_019313410.1 hypothetical protein -
  AB1F71_RS08635 (AB1F71_08635) - 1750559..1751503 (+) 945 WP_002262667.1 magnesium transporter CorA family protein -
  AB1F71_RS08640 (AB1F71_08640) - 1751785..1752447 (+) 663 WP_002262668.1 DUF1129 domain-containing protein -
  AB1F71_RS08645 (AB1F71_08645) hdrR 1752586..1752942 (+) 357 WP_002262669.1 LytTR family transcriptional regulator HdrR Regulator
  AB1F71_RS08650 (AB1F71_08650) hdrM 1752939..1753625 (+) 687 WP_002262670.1 hdrR negative regulator HdrM Regulator
  AB1F71_RS08655 (AB1F71_08655) - 1753633..1754352 (-) 720 WP_002262671.1 TraX family protein -
  AB1F71_RS08660 (AB1F71_08660) rpsR 1754671..1754910 (-) 240 WP_000068664.1 30S ribosomal protein S18 -
  AB1F71_RS08665 (AB1F71_08665) - 1754939..1755433 (-) 495 WP_002261867.1 single-stranded DNA-binding protein -
  AB1F71_RS08670 (AB1F71_08670) rpsF 1755451..1755741 (-) 291 WP_002261866.1 30S ribosomal protein S6 -
  AB1F71_RS08675 (AB1F71_08675) - 1755897..1756142 (-) 246 WP_002263367.1 hypothetical protein -
  AB1F71_RS08680 (AB1F71_08680) - 1756447..1756650 (+) 204 WP_002263366.1 hypothetical protein -

Sequence

Protein


Download         Length: 118 a.a.        Molecular weight: 14134.45 Da        Isoelectric Point: 10.3603

>NTDB_id=918055 AB1F71_RS08645 WP_002262669.1 1752586..1752942(+) (hdrR) [Streptococcus mutans strain UA159 ykuR deletion]
MEIHLNPKHQSVEVFLEKEIFFLNIRDILFIEINNRKTYVHTNDKVYKSHLLLRDFKEILPDYFQQIGKSQIANSLEISA
INKSFSSTPKISFRHSSKTTWVSRKYYKELLMKKRSLL

Nucleotide


Download         Length: 357 bp        

>NTDB_id=918055 AB1F71_RS08645 WP_002262669.1 1752586..1752942(+) (hdrR) [Streptococcus mutans strain UA159 ykuR deletion]
ATGGAGATTCACTTAAATCCTAAACATCAGTCAGTAGAGGTCTTTTTAGAAAAGGAAATTTTCTTTTTAAATATTAGAGA
TATTCTCTTTATTGAAATCAACAATCGGAAAACTTATGTTCATACTAATGATAAAGTTTACAAAAGCCATTTGCTTCTGC
GCGATTTCAAAGAAATTTTACCTGATTATTTTCAGCAAATTGGCAAGAGTCAGATTGCCAATAGCCTTGAAATTTCTGCC
ATCAATAAGTCTTTCTCCTCTACCCCCAAAATTAGTTTTAGACATTCATCCAAAACAACTTGGGTATCTCGTAAATACTA
CAAAGAATTACTTATGAAAAAAAGGAGTTTACTATGA

Domains

Predicted by InterProScan.

LytTr DNA-binding domain (LytTR)

(19-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hdrR Streptococcus mutans UA159

100

100

1