Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   AB1F71_RS08625 Genome accession   NZ_CP160386
Coordinates   1747057..1749888 (-) Length   943 a.a.
NCBI ID   WP_002262666.1    Uniprot ID   P72481
Organism   Streptococcus mutans strain UA159 ykuR deletion     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1742057..1754888
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB1F71_RS08595 (AB1F71_08595) nusB 1743076..1743504 (-) 429 WP_002262660.1 transcription antitermination factor NusB -
  AB1F71_RS08600 (AB1F71_08600) - 1743497..1743886 (-) 390 WP_002262661.1 Asp23/Gls24 family envelope stress response protein -
  AB1F71_RS08605 (AB1F71_08605) efp 1743929..1744489 (-) 561 WP_002262662.1 elongation factor P -
  AB1F71_RS08610 (AB1F71_08610) - 1744629..1745333 (+) 705 WP_002262663.1 ion transporter -
  AB1F71_RS08615 (AB1F71_08615) - 1745381..1745833 (-) 453 WP_002262664.1 deaminase -
  AB1F71_RS08620 (AB1F71_08620) - 1746003..1747067 (-) 1065 WP_002262665.1 Xaa-Pro peptidase family protein -
  AB1F71_RS08625 (AB1F71_08625) uvrA 1747057..1749888 (-) 2832 WP_002262666.1 excinuclease ABC subunit UvrA Machinery gene
  AB1F71_RS08630 (AB1F71_08630) - 1749938..1750159 (+) 222 WP_019313410.1 hypothetical protein -
  AB1F71_RS08635 (AB1F71_08635) - 1750559..1751503 (+) 945 WP_002262667.1 magnesium transporter CorA family protein -
  AB1F71_RS08640 (AB1F71_08640) - 1751785..1752447 (+) 663 WP_002262668.1 DUF1129 domain-containing protein -
  AB1F71_RS08645 (AB1F71_08645) hdrR 1752586..1752942 (+) 357 WP_002262669.1 LytTR family transcriptional regulator HdrR Regulator
  AB1F71_RS08650 (AB1F71_08650) hdrM 1752939..1753625 (+) 687 WP_002262670.1 hdrR negative regulator HdrM Regulator
  AB1F71_RS08655 (AB1F71_08655) - 1753633..1754352 (-) 720 WP_002262671.1 TraX family protein -

Sequence

Protein


Download         Length: 943 a.a.        Molecular weight: 104118.65 Da        Isoelectric Point: 6.8605

>NTDB_id=918054 AB1F71_RS08625 WP_002262666.1 1747057..1749888(-) (uvrA) [Streptococcus mutans strain UA159 ykuR deletion]
MQDKLIIRGARAHNLKNIDVEIPRDKLIVMTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGNMDKPDVDSIDGL
SPAISIDQKTTSKNPRSTVGTVTEINDYLRLLYARVGIPYCKNGHGAITASSVEQIVDQVLILPERTRMQILAPVVRRKK
GQHKAVFDRIQKDGYVRVRIDGDIMDVAEVPELSKNKMHNIEVVVDRLVQKDGIRGRLFDSIEAALHLGDGYVIIDTMDD
HELIFSEHYSCPVCGFTVPELEPRLFSFNAPFGSCPTCDGLGIKLEVDLDLVIPDENKTLREGTLAPWNPISSNYYPQLL
EQAMNAFGVDMDKPWKDLSDEDKKLVLHGSGDTAFHFHYQNDFGGVRDIDIPFEGIISNISRRYHETNSDFTRNVMRSYM
NELPCATCHGYRLNDQALSVRVGGKEGLNIGQVSELSIADHLSLLTHLELSENEKTIATPIVKEIKDRLTFLNNVGLNYL
TLSRSAGTLSGGESQRIRLATQIGSNLSGVLYILDEPSIGLHQRDNDRLISSLKKMRDLGNTLIVVEHDEDTMMAADWLV
DVGPGAGALGGEIVASGTPRQVAKNKKSITGQYLSGKKKIPVPLDRRKGSGRFIEIKGAAENNLQNINVKFPLGKFIAVT
GVSGSGKSTLVNSILKKVIAQKLNRNSEKPGKYKSISGIEHIDRLIDIDQSPIGRTPRSNPATYTGVFDDIRDLFAQTNE
AKIRGYKKGRFSFNVKGGRCEACSGDGIIKIEMHFLPDVYVPCEVCHGTRYNSETLEVHYKDKNIAEILNMTVNDAAEFF
APIPKIARKIRTIKDVGLGYVTLGQPATTLSGGEAQRMKLASELHKRSTGKSFYILDEPTTGLHTDDIARLLKVLERFVD
DGNTVLVIEHNLDVIKTADHIIDLGPEGGVGGGQVIATGTPEQVAEMTESYTGQYLKGRLNEK

Nucleotide


Download         Length: 2832 bp        

>NTDB_id=918054 AB1F71_RS08625 WP_002262666.1 1747057..1749888(-) (uvrA) [Streptococcus mutans strain UA159 ykuR deletion]
ATGCAAGATAAATTAATTATTCGTGGAGCGCGTGCTCATAACTTAAAAAATATAGATGTGGAAATTCCGCGTGATAAGTT
GATTGTCATGACGGGCTTATCGGGTTCAGGAAAGTCCAGTCTGGCTTTTGATACCATTTACGCCGAAGGGCAACGCCGTT
ATGTTGAGAGTTTATCGGCTTATGCTAGACAGTTTTTAGGAAATATGGATAAGCCTGATGTTGATTCGATTGATGGTCTT
AGCCCTGCTATTTCCATTGACCAAAAGACAACCAGTAAAAATCCACGTTCTACTGTTGGTACAGTTACAGAGATTAATGA
TTATCTCCGATTATTATATGCACGCGTTGGTATTCCTTATTGTAAAAATGGTCATGGTGCTATCACGGCTTCTTCAGTAG
AGCAGATTGTTGATCAAGTTTTGATCTTGCCTGAGCGGACACGAATGCAGATTTTGGCACCTGTTGTTCGGCGGAAAAAA
GGTCAACATAAGGCAGTATTTGATCGCATTCAAAAAGATGGCTATGTTCGTGTGCGTATAGATGGCGACATTATGGATGT
AGCAGAAGTTCCTGAACTTTCAAAAAATAAAATGCACAACATTGAAGTGGTTGTTGATCGTCTCGTGCAAAAGGATGGTA
TTAGAGGACGTTTGTTTGATTCCATTGAAGCAGCTTTGCATTTGGGAGATGGTTATGTCATCATTGATACTATGGATGAT
CATGAATTGATTTTCTCAGAACACTATTCTTGTCCTGTTTGTGGTTTTACTGTTCCAGAATTGGAACCGCGTCTCTTTTC
TTTTAATGCACCCTTTGGTTCTTGTCCTACCTGTGATGGTTTAGGGATTAAATTAGAAGTCGATTTGGACTTGGTTATTC
CAGATGAGAATAAGACTTTGAGAGAGGGAACGCTGGCTCCTTGGAATCCTATTTCTTCAAACTATTATCCGCAGCTATTA
GAGCAGGCTATGAATGCTTTTGGTGTAGATATGGATAAACCTTGGAAAGATTTATCAGATGAGGATAAAAAACTCGTCTT
ACATGGTTCAGGTGACACAGCATTTCATTTTCATTATCAAAATGATTTTGGCGGTGTCAGGGATATTGATATTCCTTTTG
AAGGCATTATTAGCAATATTAGCCGCCGTTATCATGAAACTAATAGTGATTTCACACGTAATGTCATGCGCAGCTATATG
AATGAGCTGCCTTGTGCAACCTGTCATGGTTATCGACTCAATGATCAAGCTCTTAGTGTACGGGTTGGCGGAAAAGAAGG
CCTAAATATTGGTCAGGTATCTGAGCTATCCATTGCGGATCACTTGAGTTTGCTGACTCATTTGGAACTGTCAGAAAATG
AAAAAACCATTGCAACACCCATTGTCAAGGAAATTAAGGATCGTCTGACTTTCCTTAATAATGTGGGTCTTAATTATTTG
ACTTTATCACGCTCAGCAGGAACGCTATCAGGAGGTGAAAGCCAACGCATTCGTCTAGCAACTCAGATTGGTTCTAATTT
AAGCGGTGTACTTTATATTTTGGATGAACCTTCCATTGGTTTACATCAAAGAGATAACGACCGCCTTATTTCCAGTCTTA
AGAAAATGCGAGATTTGGGGAATACTTTGATTGTTGTCGAACATGATGAAGATACCATGATGGCAGCTGATTGGCTGGTT
GATGTTGGACCGGGAGCAGGTGCTTTAGGTGGTGAAATTGTTGCCTCAGGCACCCCAAGGCAAGTTGCTAAAAATAAAAA
GTCTATTACTGGACAGTATTTATCTGGTAAGAAAAAAATTCCTGTACCTTTGGATCGTCGTAAAGGGAGTGGCCGTTTCA
TTGAAATCAAAGGAGCAGCAGAAAACAATCTGCAAAACATTAATGTTAAATTTCCTCTTGGAAAATTTATTGCCGTTACA
GGTGTTTCGGGTTCTGGTAAATCAACACTGGTTAATAGTATTTTAAAAAAAGTCATTGCTCAAAAACTCAATCGTAATTC
TGAAAAGCCAGGCAAATACAAGTCTATTTCAGGAATTGAACATATTGATCGTTTAATTGACATTGATCAAAGCCCAATTG
GCCGTACACCAAGATCCAATCCTGCCACCTATACAGGTGTCTTTGATGATATTCGTGACCTTTTTGCTCAAACCAATGAA
GCTAAAATTCGCGGTTACAAGAAGGGACGTTTTTCTTTCAATGTTAAAGGCGGACGCTGCGAAGCCTGCTCAGGTGATGG
CATTATCAAAATTGAAATGCACTTTTTGCCAGATGTTTATGTGCCTTGTGAAGTCTGTCATGGAACGCGTTATAATAGTG
AGACTTTGGAAGTTCATTACAAGGACAAAAATATTGCAGAAATTCTTAATATGACAGTCAATGACGCAGCAGAATTTTTT
GCACCGATTCCTAAAATTGCTCGCAAGATTCGAACCATTAAGGATGTTGGTCTGGGTTATGTGACTCTTGGACAGCCAGC
GACCACTTTATCAGGTGGGGAAGCGCAGCGCATGAAGTTGGCTTCTGAACTGCATAAACGCTCAACGGGAAAGAGTTTTT
ATATTCTTGATGAGCCTACAACTGGTCTCCATACAGATGATATTGCTAGACTTCTTAAAGTCTTAGAGCGCTTTGTTGAT
GATGGCAATACCGTGCTTGTCATTGAGCATAATTTGGACGTTATTAAAACAGCTGACCATATTATTGACTTGGGACCGGA
AGGCGGTGTTGGTGGTGGTCAAGTCATAGCGACTGGGACACCAGAACAAGTAGCTGAGATGACGGAAAGCTATACAGGAC
AGTATTTGAAGGGAAGACTAAATGAAAAATAG

Domains

Predicted by InterProScan.

UvrA interaction domain (UvrA_inter)

(132-238)

UvrA DNA-binding domain (UvrA_DNA-bind)

(288-396)

ABC transporter (ABC_tran)

(624-860)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P72481

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

84.093

100

0.841
  uvrA Streptococcus pneumoniae TIGR4

84.093

100

0.841
  uvrA Streptococcus pneumoniae D39

84.093

100

0.841