Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   VNN43_RS02555 Genome accession   NZ_CP141685
Coordinates   513948..514337 (-) Length   129 a.a.
NCBI ID   WP_019291355.1    Uniprot ID   A0A252CCZ8
Organism   Lactococcus petauri strain R21-69 HC     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 507497..514337 513948..514337 within 0


Gene organization within MGE regions


Location: 507497..514337
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VNN43_RS02520 (VNN43_02520) tmk 507497..508126 (-) 630 WP_117516745.1 dTMP kinase -
  VNN43_RS02525 (VNN43_02525) yycF 508337..509038 (+) 702 WP_003133894.1 response regulator YycF -
  VNN43_RS02530 (VNN43_02530) - 509031..510449 (+) 1419 WP_206888223.1 ATP-binding protein -
  VNN43_RS02535 (VNN43_02535) - 510446..511258 (+) 813 WP_165716504.1 MBL fold metallo-hydrolase -
  VNN43_RS02540 (VNN43_02540) groL 511308..512933 (-) 1626 WP_003133890.1 chaperonin GroEL -
  VNN43_RS02545 (VNN43_02545) groES 512962..513243 (-) 282 WP_061413785.1 co-chaperone GroES -
  VNN43_RS02550 (VNN43_02550) - 513361..513891 (-) 531 WP_206888217.1 ClbS/DfsB family four-helix bundle protein -
  VNN43_RS02555 (VNN43_02555) ssbB 513948..514337 (-) 390 WP_019291355.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 129 a.a.        Molecular weight: 14707.85 Da        Isoelectric Point: 9.3830

>NTDB_id=917989 VNN43_RS02555 WP_019291355.1 513948..514337(-) (ssbB) [Lactococcus petauri strain R21-69 HC]
MNKTLLVGRLVADPELTKTSNGKSLLRINLAVKRRYKNASGEKDTDFVALVFWEKQAEHCTSYAKKGALLAVEGEIRTRN
YVDKQEQKRYVTEVLVKTFDLLESRATVAMRQDSIENSALNLKEDELPF

Nucleotide


Download         Length: 390 bp        

>NTDB_id=917989 VNN43_RS02555 WP_019291355.1 513948..514337(-) (ssbB) [Lactococcus petauri strain R21-69 HC]
ATGAATAAAACGTTACTTGTTGGCCGACTCGTTGCAGATCCAGAACTCACTAAAACATCTAATGGGAAAAGCCTATTGAG
AATAAATCTTGCTGTCAAACGACGCTATAAAAATGCTTCAGGTGAAAAAGATACAGACTTTGTCGCTTTGGTCTTTTGGG
AGAAACAGGCGGAACACTGTACATCCTATGCTAAAAAAGGTGCCCTACTTGCTGTAGAAGGGGAGATACGAACCAGGAAT
TATGTGGACAAGCAGGAACAAAAACGCTATGTGACAGAAGTGTTGGTGAAAACTTTTGACCTTTTGGAAAGTCGCGCGAC
AGTTGCCATGCGACAAGATTCTATAGAAAATAGTGCTCTTAATTTAAAAGAAGACGAATTACCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A252CCZ8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Lactococcus lactis subsp. cremoris KW2

57.364

100

0.574
  ssbB/cilA Streptococcus pneumoniae TIGR4

52.308

100

0.527
  ssbB/cilA Streptococcus mitis NCTC 12261

52.308

100

0.527
  ssbB/cilA Streptococcus pneumoniae R6

51.538

100

0.519
  ssbA Streptococcus mutans UA159

51.538

100

0.519
  ssbB/cilA Streptococcus mitis SK321

51.538

100

0.519
  ssbB/cilA Streptococcus pneumoniae D39

51.538

100

0.519
  ssbB Streptococcus sobrinus strain NIDR 6715-7

51.538

100

0.519
  ssbB/cilA Streptococcus pneumoniae Rx1

51.538

100

0.519
  ssb Latilactobacillus sakei subsp. sakei 23K

45.536

86.822

0.395