Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   OCV20_RS09445 Genome accession   NZ_AP025470
Coordinates   2058087..2059268 (+) Length   393 a.a.
NCBI ID   WP_086775255.1    Uniprot ID   -
Organism   Vibrio coralliirubri strain DSM 27495     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2053087..2064268
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV20_RS09420 - 2053244..2053699 (+) 456 WP_048611807.1 Fur family transcriptional regulator -
  OCV20_RS09425 - 2053758..2054318 (+) 561 WP_048611500.1 carbonate dehydratase -
  OCV20_RS09430 - 2054308..2055306 (+) 999 WP_086775252.1 CobW family GTP-binding protein -
  OCV20_RS09435 - 2055398..2056297 (-) 900 WP_086775253.1 EamA family transporter -
  OCV20_RS09440 - 2056401..2057783 (+) 1383 WP_086775254.1 PLP-dependent aminotransferase family protein -
  OCV20_RS09445 cqsA 2058087..2059268 (+) 1182 WP_086775255.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  OCV20_RS09450 - 2059419..2061467 (-) 2049 WP_086775256.1 hybrid sensor histidine kinase/response regulator -
  OCV20_RS09455 - 2061725..2062540 (-) 816 Protein_1806 TauD/TfdA dioxygenase family protein -
  OCV20_RS09460 - 2063029..2063430 (+) 402 WP_086775257.1 ACT domain-containing protein -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43804.99 Da        Isoelectric Point: 6.6608

>NTDB_id=91792 OCV20_RS09445 WP_086775255.1 2058087..2059268(+) (cqsA) [Vibrio coralliirubri strain DSM 27495]
MSDKTKNKPLPSFIEERLNFYIQDLITQNQSQKHLVLGKRPQRSAVVMQSNDYLALSHNKQIQQAHQAAICEHDDNVVMS
AIFLQDEQSKPAFETELANYVGMESCMLSQSGWAANIGLLQTICPPETPVYIDFLAHMSLWEGIRAAGAVAHPFMHNNMN
HLRKQLERHGSGVIVVDSVYSTIGTIAPLRDIYEMAQEFDCAVVVDESHSLGTHGENGAGLVQALGLTNQVDFITVSLAK
TFAYRAGAILGPKQLSRTLPFVAYPAIFSSTVLPQEVVRLEKTLEVIKGAEGKREALFNRAKSLTTGLKRIGFNIRSESQ
IVALECGNERNTERVRDFLEQRDVFGAVFCRPATGKNKNIIRFSVNADMTPKDIDHVLTVCHEAYHHPELEFV

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=91792 OCV20_RS09445 WP_086775255.1 2058087..2059268(+) (cqsA) [Vibrio coralliirubri strain DSM 27495]
ATGAGTGATAAAACAAAAAACAAACCACTACCTTCCTTTATCGAAGAACGCTTGAACTTCTATATTCAAGACCTGATTAC
CCAGAATCAAAGCCAAAAGCATTTGGTATTGGGTAAACGCCCCCAGCGCAGTGCCGTTGTGATGCAGAGCAATGATTACC
TAGCGCTGTCACACAACAAACAGATCCAACAAGCCCATCAAGCGGCGATCTGTGAGCACGATGACAACGTGGTGATGTCT
GCCATTTTCTTACAAGATGAGCAGTCTAAACCCGCATTTGAAACAGAACTCGCTAACTATGTCGGAATGGAGAGCTGTAT
GCTTTCTCAATCAGGCTGGGCGGCCAATATTGGGCTATTGCAAACCATCTGCCCACCGGAGACACCTGTGTATATTGATT
TCCTTGCACACATGTCGCTATGGGAAGGAATCCGCGCTGCCGGCGCAGTTGCCCACCCGTTTATGCATAACAATATGAAT
CACCTACGCAAACAGTTAGAACGCCACGGCTCAGGCGTCATTGTTGTCGACTCGGTTTACAGCACAATCGGCACCATTGC
CCCACTGCGCGACATCTACGAAATGGCGCAAGAGTTTGATTGTGCGGTCGTCGTTGATGAATCCCATTCACTGGGTACAC
ATGGAGAGAATGGTGCAGGCTTAGTGCAAGCATTGGGGCTCACCAACCAAGTCGACTTCATCACCGTTAGCTTGGCAAAA
ACCTTTGCTTATCGCGCTGGGGCAATCCTTGGCCCTAAACAACTGTCTAGAACCTTGCCGTTTGTGGCGTACCCTGCGAT
TTTTAGCTCAACAGTGTTACCACAAGAAGTGGTTCGTTTAGAGAAAACGTTAGAGGTGATCAAAGGTGCGGAAGGCAAAC
GAGAAGCCTTATTCAATCGGGCAAAATCGCTAACTACGGGGCTAAAACGAATTGGCTTTAACATCCGCAGTGAGTCTCAA
ATTGTAGCGTTAGAGTGCGGCAATGAGAGAAACACTGAACGTGTGCGTGACTTCCTAGAACAGCGCGATGTGTTCGGTGC
GGTATTCTGCCGCCCTGCGACTGGCAAGAACAAAAACATCATCCGTTTTTCAGTGAATGCCGACATGACGCCAAAAGACA
TTGACCATGTGCTCACGGTTTGTCACGAAGCGTACCATCACCCCGAGTTAGAGTTCGTGTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(46-378)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

55.556

98.473

0.547

Multiple sequence alignment