Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   OCV20_RS09355 Genome accession   NZ_AP025470
Coordinates   2041124..2042548 (+) Length   474 a.a.
NCBI ID   WP_086775247.1    Uniprot ID   -
Organism   Vibrio coralliirubri strain DSM 27495     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 2039728..2040450 2041124..2042548 flank 674


Gene organization within MGE regions


Location: 2039728..2042548
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV20_RS09350 - 2039728..2040648 (-) 921 WP_086773621.1 IS5 family transposase -
  OCV20_RS09355 sbcB 2041124..2042548 (+) 1425 WP_086775247.1 exodeoxyribonuclease I Machinery gene

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54621.92 Da        Isoelectric Point: 4.8645

>NTDB_id=91791 OCV20_RS09355 WP_086775247.1 2041124..2042548(+) (sbcB) [Vibrio coralliirubri strain DSM 27495]
MSSDNQPTYFFFDYETWGVSPAKDRPSQFAGVRTDQDFNVIGEPLVIYCQPPADYLPAPEAALITRITPQKAASQGLPEP
EFIAKIHAELAKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRAVHALRPEGIVWPENEEGYP
SFKLEHLSVANGIEHENAHDAMADVIATIELAKKLKAAQPKMFDYLYNMRHKRKLNDLVDIVNMTPLMHVSGMFGRDCNY
TSWIVPMAWHPTNQNAVIVVDLAKDPSPLLELGADELRDRLYTKRSELSEDELPVPIKLVQLNKCPILAPAKTLTAENAE
TIGIDRQQCLKNLALLREHPEIREKLIGLYSQEREYEKSDDVDTHLYDGFFSPADKTAMNIIRETDPNNLAALDITFSDE
RIKPLLFRYRARNFPWTLDEAEQLKWANHCREFYECRLEEYMLNLENLAHEHESDEKKMAILKAVYQYVEKLAS

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=91791 OCV20_RS09355 WP_086775247.1 2041124..2042548(+) (sbcB) [Vibrio coralliirubri strain DSM 27495]
ATGAGTTCAGATAATCAGCCGACCTACTTCTTTTTCGATTACGAAACTTGGGGCGTTAGCCCAGCAAAAGACCGTCCGAG
TCAGTTTGCAGGTGTTCGTACCGACCAAGATTTCAATGTTATTGGAGAGCCTCTGGTTATCTACTGCCAACCTCCTGCTG
ATTACCTCCCTGCGCCAGAAGCAGCATTGATCACCCGTATCACCCCTCAAAAAGCGGCTTCACAAGGTCTTCCTGAACCT
GAGTTTATCGCTAAGATCCATGCTGAGTTGGCGAAACCAAACACCACAAGCCTTGGCTACAACAGTATTCGATTCGATGA
TGAGGTAACGCGTTACACCTGTTACCGAAACTTCATCGACCCATATGCGTGGAGCTGGCAGAACGGCAACTCTCGTTGGG
ATCTATTAGATGTAATGCGCGCTGTTCACGCACTGCGTCCTGAAGGCATTGTTTGGCCAGAGAACGAAGAAGGTTACCCA
AGCTTCAAACTGGAACACCTATCTGTGGCAAACGGCATTGAACATGAGAACGCGCACGATGCGATGGCAGATGTTATTGC
GACCATCGAGTTAGCGAAGAAGCTGAAAGCTGCGCAACCTAAGATGTTCGATTACCTTTACAACATGCGTCATAAGCGTA
AGCTAAATGACCTGGTTGATATCGTAAACATGACACCATTAATGCACGTTTCTGGCATGTTTGGCCGTGACTGCAACTAC
ACAAGCTGGATTGTGCCTATGGCTTGGCACCCAACCAATCAAAATGCCGTTATCGTGGTTGATTTAGCCAAAGATCCAAG
CCCACTGTTAGAACTGGGCGCTGATGAACTCAGAGACAGGCTCTATACCAAACGCAGCGAACTGAGTGAAGACGAGTTAC
CCGTACCCATCAAATTGGTTCAACTGAACAAGTGCCCTATTCTTGCTCCAGCCAAAACGCTGACGGCTGAAAATGCCGAA
ACCATCGGTATCGATCGCCAACAATGCTTGAAGAACTTGGCACTGCTGCGCGAACATCCAGAGATTCGCGAAAAACTGAT
CGGCCTGTACTCACAAGAACGCGAGTACGAAAAGAGTGATGATGTTGATACACACCTTTACGACGGTTTCTTTTCACCTG
CTGATAAAACAGCGATGAACATCATTCGTGAAACTGACCCGAACAACTTGGCAGCTTTGGATATCACCTTCAGTGACGAA
CGAATTAAACCGTTACTGTTCCGTTACCGTGCGCGTAACTTCCCATGGACGCTCGACGAAGCTGAACAATTGAAATGGGC
AAACCATTGTCGTGAGTTTTATGAGTGCCGTTTAGAAGAGTACATGCTCAACCTTGAAAACCTCGCGCACGAACATGAAA
GCGACGAGAAGAAAATGGCTATCTTGAAAGCGGTTTATCAGTACGTAGAAAAGTTAGCTAGCTAA

Domains

Predicted by InterproScan.

Exonuclease (RNase_T)

(11-191)

Exonuclease C-terminal (Exonuc_X-T_C)

(210-470)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

76.321

99.789

0.762

Multiple sequence alignment