Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   ABVF41_RS02320 Genome accession   NZ_CP160385
Coordinates   443011..443493 (-) Length   160 a.a.
NCBI ID   WP_002263047.1    Uniprot ID   Q8DVK8
Organism   Streptococcus mutans strain UA159-WCSS     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 438011..448493
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABVF41_RS02295 (ABVF41_02295) - 438625..439146 (+) 522 WP_002263051.1 DUF1273 domain-containing protein -
  ABVF41_RS02300 (ABVF41_02300) gpsB 439252..439590 (+) 339 WP_002263050.1 cell division regulator GpsB -
  ABVF41_RS02310 (ABVF41_02310) - 440040..441194 (+) 1155 WP_002263884.1 class I SAM-dependent RNA methyltransferase -
  ABVF41_RS02315 (ABVF41_02315) - 441210..442850 (+) 1641 WP_002263048.1 cell division site-positioning protein MapZ family protein -
  ABVF41_RS02320 (ABVF41_02320) luxS 443011..443493 (-) 483 WP_002263047.1 S-ribosylhomocysteine lyase Regulator
  ABVF41_RS02325 (ABVF41_02325) - 443638..445245 (+) 1608 WP_002263046.1 ribonuclease Y -
  ABVF41_RS02330 (ABVF41_02330) gmk 445692..446324 (+) 633 WP_002263045.1 guanylate kinase -
  ABVF41_RS02335 (ABVF41_02335) rpoZ 446348..446665 (+) 318 WP_002263044.1 DNA-directed RNA polymerase subunit omega -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17988.67 Da        Isoelectric Point: 6.1364

>NTDB_id=917872 ABVF41_RS02320 WP_002263047.1 443011..443493(-) (luxS) [Streptococcus mutans strain UA159-WCSS]
MTKEVTVESFELDHIAVKAPYVRLISEEFGPKGDLITNFDIRLVQPNEDSIPTAGLHTIEHLLAKLIRQRIDGMIDCSPF
GCRTGFHLIMWGKHTTTQIATVIKASLEEIANTISWKDVPGTTIESCGNYKDHSLFSAKEWAKLILKQGISDDPFERHLV

Nucleotide


Download         Length: 483 bp        

>NTDB_id=917872 ABVF41_RS02320 WP_002263047.1 443011..443493(-) (luxS) [Streptococcus mutans strain UA159-WCSS]
ATGACAAAAGAAGTTACTGTTGAAAGCTTTGAACTTGATCACATTGCTGTAAAAGCCCCTTATGTCCGTCTTATTTCAGA
AGAGTTTGGACCTAAAGGCGATCTTATTACCAATTTTGATATTCGCTTAGTACAGCCTAATGAAGACTCTATTCCGACTG
CAGGCCTTCATACTATTGAACATTTACTGGCTAAGCTGATTCGTCAGCGTATTGACGGGATGATTGACTGTTCCCCTTTT
GGCTGTCGTACTGGTTTTCATCTCATCATGTGGGGTAAGCATACAACAACCCAAATAGCCACAGTCATCAAAGCAAGTTT
AGAAGAAATTGCTAATACAATCTCATGGAAAGATGTCCCTGGAACAACTATTGAGTCCTGTGGGAATTACAAAGATCATA
GCCTTTTTTCAGCTAAAGAATGGGCAAAGCTGATTTTAAAACAAGGCATTTCAGATGATCCTTTTGAGCGTCATCTAGTG
TAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(7-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8DVK8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

38.926

93.125

0.362