Detailed information    

insolico Bioinformatically predicted

Overview

Name   cipB   Type   Regulator
Locus tag   ABVF41_RS02100 Genome accession   NZ_CP160385
Coordinates   396338..396568 (+) Length   76 a.a.
NCBI ID   WP_002275977.1    Uniprot ID   Q8DVP7
Organism   Streptococcus mutans strain UA159-WCSS     
Function   indirect induction of ComX; activation of comRS system (predicted from homology)   
Competence regulation

Genomic Context

Location: 391338..401568
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABVF41_RS02080 (ABVF41_02080) - 391907..392203 (+) 297 WP_002263922.1 YlxR family protein -
  ABVF41_RS02085 (ABVF41_02085) - 392196..392498 (+) 303 WP_002262601.1 YlxQ-related RNA-binding protein -
  ABVF41_RS02090 (ABVF41_02090) infB 392519..395269 (+) 2751 WP_002262600.1 translation initiation factor IF-2 -
  ABVF41_RS02095 (ABVF41_02095) rbfA 395503..395853 (+) 351 WP_002262599.1 30S ribosome-binding factor RbfA -
  ABVF41_RS02100 (ABVF41_02100) cipB 396338..396568 (+) 231 WP_002275977.1 bacteriocin class II family protein Regulator
  ABVF41_RS02105 (ABVF41_02105) - 396959..397402 (+) 444 WP_002263708.1 CopY/TcrY family copper transport repressor -
  ABVF41_RS02110 (ABVF41_02110) - 397399..399627 (+) 2229 WP_002263707.1 heavy metal translocating P-type ATPase -
  ABVF41_RS02115 (ABVF41_02115) copZ 399640..399843 (+) 204 WP_002263706.1 copper chaperone CopZ -
  ABVF41_RS02120 (ABVF41_02120) - 400090..400911 (+) 822 WP_032497569.1 Cof-type HAD-IIB family hydrolase -
  ABVF41_RS02125 (ABVF41_02125) - 401018..401509 (-) 492 WP_011074508.1 YgjV family protein -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 7229.19 Da        Isoelectric Point: 3.7781

>NTDB_id=917870 ABVF41_RS02100 WP_002275977.1 396338..396568(+) (cipB) [Streptococcus mutans strain UA159-WCSS]
MNTQAFEQFNVMDNEALSTVEGGGMIRCALGTAGSAGLGFVGGMGAGTVTLPVVGTVSGAALGGWSGAAVGAATFC

Nucleotide


Download         Length: 231 bp        

>NTDB_id=917870 ABVF41_RS02100 WP_002275977.1 396338..396568(+) (cipB) [Streptococcus mutans strain UA159-WCSS]
ATGAATACACAAGCATTTGAACAATTTAACGTAATGGATAATGAAGCACTTTCAACTGTTGAGGGTGGTGGTATGATTAG
ATGTGCACTTGGCACAGCTGGTTCTGCAGGTTTAGGATTTGTAGGGGGTATGGGAGCTGGTACAGTTACTCTCCCAGTCG
TTGGTACAGTATCTGGAGCGGCTTTAGGAGGCTGGTCTGGAGCAGCTGTAGGTGCTGCTACTTTTTGTTGA

Domains

Predicted by InterProScan.

Bacteriocin class II with double-glycine leader peptide (Bacteriocin_IIc)

(6-70)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8DVP7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cipB Streptococcus mutans UA159

71.429

55.263

0.395