Detailed information NTG0091786

Bioinformatically predicted

Overview

• Name: chiS
• Type: Regulator
• Locus tag: OCV20_RS02960
• Genome accession: NZ_AP025470
• Coordinates: 592858..596247 (-)
• Length: 1129 a.a.
• NCBI ID: WP_086774156.1
• Uniprot ID: -
• Organism: Vibrio coralliirubri strain DSM 27495
• Function: chitin sensor (predicted from homology) Competence regulation

Genomic Context

Location: 587858..601247

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OCV20_RS02945	-	588291..589316 (-)	1026	WP_017056648.1	ABC transporter permease	-
OCV20_RS02950	-	589319..590305 (-)	987	WP_017633262.1	ABC transporter permease	-
OCV20_RS02955	-	590475..592157 (-)	1683	WP_017056650.1	ABC transporter substrate-binding protein	-
OCV20_RS02960	chiS	592858..596247 (-)	3390	WP_086774156.1	response regulator	Regulator
OCV20_RS02965	rsmC	596464..597486 (-)	1023	WP_048612316.1	16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	-
OCV20_RS02970	-	597863..598948 (-)	1086	WP_048612315.1	AI-2E family transporter	-
OCV20_RS02975	-	599025..599150 (+)	126	WP_004734537.1	hypothetical protein	-
OCV20_RS02980	hemL	599292..600587 (-)	1296	WP_086774155.1	glutamate-1-semialdehyde 2,1-aminomutase	-
OCV20_RS02985	erpA	600884..601225 (+)	342	WP_004734539.1	iron-sulfur cluster insertion protein ErpA	-

Sequence

Protein

• Length: 1129 a.a.
• Molecular weight: 127104.72 Da
• Isoelectric Point: 5.2626

>NTDB_id=91786 OCV20_RS02960 WP_086774156.1 592858..596247(-) (chiS) [Vibrio coralliirubri strain DSM 27495]
MFRFYRKQKFKRLQNTLMLAFLVLSITPVTLIAIFFLQSHSQDLQEQSTSHLVSVRDTKQQQIVDYLQAQESQVMGFVRS
ELANASGGRFYGLINAFQRLGLDIDEARGNAQQRYIQGSGDQIKTSILPESSSFIGSERYRLLHKRYHNAYLELLKRSDF
DDILLVDINGNVAYSVFKNDDYGTNLLTGKYKDSNLGITFQRLAKDVTDRRKSNEDYTPVIVSDFKDENGKQTAWLGAPI
VQQGYLHSYAMFRLPINGITKLIADLNKSSNIQTLLVGDDHLPRSLAHSQESINLSLDVVDKALAGETAVGTFDNTLDQA
IIAAYTPIELKYATWALVVELPEKEAFARIHQLEKIFVIVMLTAIILVVVASHYLSNFITSPLLKLTWAAEKVSAGDLDE
TMINTERKDEIGRLAVSFERMQRSIREKMQLIKSQNDELEDNLKTIQKQNEELQLANKLKDEFLATTSHELRTPLHGMVG
IAEALISGANGPIPANQKYQLDIIINSGQRLATLVDDLLDYHKMRYGSLDIKKSAVDLSAATSLVLELSHHLLGNKPIRI
INQVPSDLGLVSSDPQRLEQVMYNLVGNAIKYTSEGKIVISASVIDDNIRVQVVDTGQGIPAEYLEHIFEPLIQAGQDAS
NYRQGAGLGLSISRQLIELMGGSLYVSSQPMLGTTFSFTLPLATQDELDSYNESGHYSHFQAPDLIDNGQQENSVISENP
DGPLLVIADDEPVNLRVLDSFLKLEGYRVRTACDGPETIELIEKEKPELLLLDIMMPGMSGYQVCEALRKQYDHAQLPII
MLTALNQAEDRVRGFEAGANDYLSKPFNKQELAARITAHLSASKAEQRRLENDQLQLELKHRAMVEANLLETQGRLLEQL
ESAPEAIICIRDDQRIRFANEAAAKLFRRGQEQLKRSMADEIIAPKYLKVEQAHYCGDIDIYIDDTRQRIPSDILKLPEG
SGLDTMYIFNVGGGVNSNRINNLETAVEALSSYAFEGDKDKLQQLKELGGEFTRLADKATGEGKNKQELMREVLVDAMTN
AIIYWESVTGETKFAFAEKSGLWRVYLDRSTLQTRTLDKYLRVETLPKTPRWRTVLSSIEFILEHCKEQTPERTHIEMLR
DKLQKLLTS

Nucleotide

• Length: 3390 bp

>NTDB_id=91786 OCV20_RS02960 WP_086774156.1 592858..596247(-) (chiS) [Vibrio coralliirubri strain DSM 27495]
ATGTTTAGATTCTATCGTAAGCAGAAGTTTAAGCGCCTTCAAAATACCCTAATGCTGGCATTTCTTGTCCTCAGTATTAC
CCCAGTGACACTTATCGCGATATTTTTCCTCCAATCGCACAGTCAGGATCTCCAGGAACAAAGCACCTCACACCTTGTTT
CGGTTCGTGATACTAAGCAGCAGCAAATTGTCGATTACCTACAAGCTCAAGAATCCCAAGTGATGGGCTTTGTTCGCTCA
GAATTGGCCAATGCCAGTGGCGGGCGATTTTATGGTTTGATCAATGCATTCCAACGATTGGGGTTAGATATTGACGAGGC
TCGCGGTAATGCACAGCAGCGCTACATTCAAGGCTCTGGCGATCAAATCAAAACGTCGATTCTTCCAGAATCTAGTAGCT
TTATTGGCAGCGAGCGTTATCGCTTACTGCACAAGCGCTACCATAATGCTTACCTAGAACTGCTTAAACGCTCTGATTTT
GACGATATTCTCTTGGTTGATATCAACGGTAATGTCGCTTATTCCGTCTTTAAAAATGACGATTACGGCACCAATCTGCT
GACAGGAAAATACAAGGATTCCAACCTAGGTATTACCTTTCAACGACTAGCCAAAGACGTAACCGACCGACGCAAATCTA
ACGAAGATTACACGCCGGTTATCGTTTCTGACTTTAAAGACGAGAATGGCAAACAGACTGCATGGTTAGGCGCACCTATT
GTTCAACAAGGCTACCTGCACAGCTACGCGATGTTTAGGCTGCCAATCAACGGCATTACTAAGCTGATTGCGGATCTCAA
CAAGAGTTCGAATATTCAAACGCTGCTTGTAGGTGATGATCACCTGCCGCGTAGCCTTGCCCATTCACAAGAATCTATCA
ACTTGAGCCTAGACGTTGTTGATAAAGCATTGGCTGGCGAAACGGCGGTTGGCACCTTCGACAACACCCTAGATCAAGCG
ATTATCGCAGCATATACACCAATTGAGCTGAAATACGCAACATGGGCTCTTGTCGTAGAGCTGCCAGAAAAAGAGGCGTT
TGCTCGTATTCATCAGTTAGAAAAGATCTTCGTGATCGTGATGCTAACGGCGATCATTCTCGTCGTTGTTGCATCGCACT
ATCTGTCTAACTTCATCACCTCCCCACTACTTAAACTGACCTGGGCTGCCGAGAAAGTATCGGCGGGTGATCTCGATGAA
ACCATGATCAATACCGAGCGCAAAGATGAGATCGGCCGACTCGCGGTGAGCTTCGAAAGAATGCAGCGCTCGATTCGTGA
AAAAATGCAGCTCATCAAAAGTCAAAATGATGAGCTTGAGGACAACCTTAAGACCATTCAAAAGCAAAACGAAGAGTTGC
AACTGGCCAACAAACTTAAAGATGAGTTCTTAGCGACCACTTCACACGAATTGAGAACACCACTGCATGGCATGGTGGGT
ATCGCTGAAGCCTTGATATCTGGAGCGAACGGCCCTATTCCTGCCAATCAGAAGTATCAGTTGGATATCATCATCAATAG
TGGTCAGAGATTGGCGACCTTGGTTGATGATCTGCTTGATTATCACAAGATGCGCTATGGCAGCTTAGACATAAAGAAAT
CAGCCGTTGATTTATCTGCAGCCACCAGCTTGGTCCTAGAGTTGTCTCATCACCTATTGGGCAATAAGCCAATCCGTATT
ATTAACCAAGTCCCAAGTGATTTAGGGCTGGTTTCATCGGATCCTCAACGACTTGAGCAAGTGATGTATAACTTGGTCGG
CAATGCCATCAAGTACACCTCAGAAGGTAAGATTGTTATCTCTGCCAGCGTTATCGATGACAACATTCGTGTACAAGTTG
TCGATACTGGCCAAGGTATTCCGGCCGAGTATCTTGAGCACATCTTTGAGCCATTGATTCAAGCAGGCCAAGATGCGAGT
AACTACCGCCAAGGTGCAGGGCTTGGATTATCGATCAGTCGTCAGCTGATCGAGTTAATGGGCGGTTCACTGTACGTAAG
TAGTCAACCAATGCTTGGCACTACGTTTAGCTTTACCCTGCCCCTAGCGACTCAAGATGAGCTGGACAGTTACAACGAAT
CCGGTCACTACTCGCACTTCCAAGCGCCGGATTTAATTGATAACGGCCAACAAGAAAACAGCGTTATCAGTGAGAACCCA
GATGGCCCGTTACTGGTTATCGCCGATGATGAGCCGGTTAACCTGCGAGTATTAGACAGCTTCTTGAAATTAGAAGGTTA
TCGAGTACGTACTGCATGTGATGGCCCGGAAACCATTGAACTGATTGAAAAAGAGAAGCCAGAGCTGCTTCTACTCGACA
TCATGATGCCAGGAATGAGCGGCTATCAGGTTTGTGAAGCACTGAGAAAGCAATACGATCATGCTCAATTGCCAATCATC
ATGCTAACAGCCCTCAACCAAGCAGAAGACCGTGTTCGAGGTTTCGAAGCTGGCGCCAATGACTACTTGTCTAAACCGTT
CAACAAACAAGAATTAGCGGCTCGAATAACAGCGCATCTATCAGCAAGTAAAGCTGAACAGAGACGCCTTGAAAACGACC
AGCTGCAACTCGAGCTCAAACATAGAGCGATGGTTGAAGCTAACTTGCTAGAAACTCAAGGCCGCTTATTAGAGCAACTA
GAATCGGCACCTGAAGCCATCATCTGTATTCGTGATGACCAACGTATTCGCTTTGCTAACGAAGCGGCGGCAAAACTATT
CAGACGCGGGCAGGAGCAACTTAAACGCTCAATGGCCGACGAGATCATTGCGCCTAAATACCTTAAAGTGGAACAAGCCC
ACTACTGCGGTGACATTGATATCTATATAGACGACACACGTCAGCGCATACCAAGTGACATCCTTAAGCTACCTGAAGGT
TCAGGGCTCGACACCATGTATATCTTTAATGTAGGTGGTGGAGTTAACTCAAACCGAATCAATAACCTTGAAACGGCGGT
TGAGGCTCTCTCTAGTTATGCCTTTGAAGGCGACAAAGATAAGTTGCAGCAACTGAAAGAGCTTGGAGGAGAATTTACTC
GTCTTGCTGACAAGGCAACCGGTGAAGGTAAAAACAAGCAAGAGTTGATGCGTGAAGTACTGGTCGATGCGATGACGAAT
GCCATCATCTACTGGGAGTCGGTGACTGGTGAAACCAAGTTCGCTTTCGCCGAGAAGAGTGGCTTGTGGCGCGTCTACTT
AGACCGCAGTACGCTGCAAACTCGAACGCTAGACAAATACCTACGCGTCGAAACCCTACCGAAAACGCCTCGCTGGCGAA
CGGTACTGAGCTCAATCGAATTCATACTGGAACACTGCAAAGAACAGACGCCAGAAAGAACCCATATTGAGATGCTAAGA
GATAAATTGCAGAAACTACTGACCAGCTAA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (726-836)

• His Kinase A (phospho-acceptor) domain (HisKA) (460-525)

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (574-683)

• PAS domain (PAS_8) (880-914)

• HAMP domain (HAMP) (375-427)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
chiS	Vibrio cholerae strain A1552	76.616	100	0.766