Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   OCV20_RS02685 Genome accession   NZ_AP025470
Coordinates   524536..525054 (+) Length   172 a.a.
NCBI ID   WP_017056597.1    Uniprot ID   A0A2N7J9T1
Organism   Vibrio coralliirubri strain DSM 27495     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 519536..530054
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV20_RS02675 gshA 522282..523850 (+) 1569 WP_050620026.1 glutamate--cysteine ligase -
  OCV20_RS02680 - 523861..524511 (+) 651 WP_017629422.1 hypothetical protein -
  OCV20_RS02685 luxS 524536..525054 (+) 519 WP_017056597.1 S-ribosylhomocysteine lyase Regulator
  OCV20_RS02690 - 525152..526423 (-) 1272 WP_050620024.1 HlyC/CorC family transporter -
  OCV20_RS02695 - 526551..527345 (-) 795 WP_019825854.1 cytochrome C assembly family protein -
  OCV20_RS02700 ffh 527546..528940 (+) 1395 WP_010435884.1 signal recognition particle protein -
  OCV20_RS02705 rpsP 529153..529401 (+) 249 WP_004410028.1 30S ribosomal protein S16 -
  OCV20_RS02710 rimM 529426..529980 (+) 555 WP_048612338.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18964.67 Da        Isoelectric Point: 4.4901

>NTDB_id=91780 OCV20_RS02685 WP_017056597.1 524536..525054(+) (luxS) [Vibrio coralliirubri strain DSM 27495]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNQLNGSDVEIIDISP
MGCRTGFYMSLIGTPTEQQVADGWLAAMQDVLKVENQNKIPELNEYQCGTAAMHSLDEAKEIANAIIAAGISVNKNDELA
LPESMLQELKID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=91780 OCV20_RS02685 WP_017056597.1 524536..525054(+) (luxS) [Vibrio coralliirubri strain DSM 27495]
ATGCCTTTATTAGATAGTTTCACTGTTGATCACACACGCATGAACGCACCTGCAGTTCGTGTTGCTAAAACAATGCAAAC
CCCAAAAGGGGATACCATCACTGTGTTTGACCTGCGTTTTACTGCGCCAAACAAAGACATCCTATCTGAGAAAGGTATCC
ATACTCTAGAGCACCTATACGCTGGTTTCATGCGTAATCAATTGAACGGCTCAGATGTAGAGATCATCGATATCTCACCG
ATGGGCTGTCGCACGGGTTTCTACATGAGCCTGATTGGTACGCCTACAGAGCAACAAGTGGCTGACGGTTGGTTGGCAGC
GATGCAAGACGTACTGAAAGTTGAGAACCAGAATAAGATCCCTGAGCTGAACGAATACCAATGTGGTACGGCAGCAATGC
ACTCTTTGGATGAAGCGAAAGAGATCGCGAATGCGATCATCGCTGCAGGCATCTCTGTAAACAAGAATGATGAACTGGCA
CTGCCAGAGTCTATGCTGCAAGAGCTTAAGATCGACTAG

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N7J9T1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

89.474

99.419

0.89

Multiple sequence alignment