Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   U9K49_RS16235 Genome accession   NZ_CP141609
Coordinates   3485524..3486906 (-) Length   460 a.a.
NCBI ID   WP_010253610.1    Uniprot ID   -
Organism   Pantoea agglomerans strain BIM B-2003     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3480524..3491906
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U9K49_RS16210 (U9K49_16210) - 3481299..3481463 (+) 165 WP_109652447.1 YhfG family protein -
  U9K49_RS16215 (U9K49_16215) - 3481476..3482078 (+) 603 WP_089414589.1 putative adenosine monophosphate-protein transferase Fic -
  U9K49_RS16220 (U9K49_16220) - 3482059..3482955 (-) 897 WP_264353300.1 LysR family transcriptional regulator -
  U9K49_RS16225 (U9K49_16225) - 3483160..3484161 (+) 1002 WP_033756486.1 zinc-binding alcohol dehydrogenase family protein -
  U9K49_RS16230 (U9K49_16230) nadR 3484207..3485448 (-) 1242 WP_010253612.1 multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR -
  U9K49_RS16235 (U9K49_16235) radA 3485524..3486906 (-) 1383 WP_010253610.1 DNA repair protein RadA Machinery gene
  U9K49_RS16240 (U9K49_16240) serB 3486920..3487897 (-) 978 WP_050680501.1 phosphoserine phosphatase -
  U9K49_RS16245 (U9K49_16245) - 3488005..3488655 (+) 651 WP_010253606.1 YtjB family periplasmic protein -
  U9K49_RS16250 (U9K49_16250) yjjG 3489320..3490000 (-) 681 WP_187484345.1 pyrimidine 5'-nucleotidase -
  U9K49_RS16255 (U9K49_16255) rimI 3490019..3490459 (-) 441 WP_010253603.1 ribosomal protein S18-alanine N-acetyltransferase -
  U9K49_RS16260 (U9K49_16260) - 3490431..3490841 (-) 411 WP_022625367.1 DNA polymerase III subunit psi -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49321.96 Da        Isoelectric Point: 7.4220

>NTDB_id=917714 U9K49_RS16235 WP_010253610.1 3485524..3486906(-) (radA) [Pantoea agglomerans strain BIM B-2003]
MAKAAKRAFVCNECGADYPRWQGQCSACHAWNTITEVRIAASPAAARNERLSGYAGSAGTSRVQKLSEISLEALPRFSTS
FKEFDRVLGGGVVPGSAILIGGSPGAGKSTLLLQVMCRLSEGMKTLYVTGEESLQQVAMRAHRLGLPTENVNMLSETSIE
QICLIAEQEQPQLMVIDSIQVMHMAEIQSSPGSVAQVRETAAYLTRFAKTRGVAIIMVGHVTKDGSLAGPKVLEHCIDCS
VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGMREVSNPSAIFLSRGEEITSGSSVMVLWEGTRPLLVEIQALVDH
SMMGNPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALMLSMVSSLRDRPLPQDLVIFGEV
GLAGEIRPVPSGQERIAEAAKHGFKRAIVPAGNAPKKPIAGMQVFSAKKLADALAILDDL

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=917714 U9K49_RS16235 WP_010253610.1 3485524..3486906(-) (radA) [Pantoea agglomerans strain BIM B-2003]
TTGGCCAAAGCGGCAAAACGCGCATTTGTCTGTAACGAATGTGGCGCAGATTACCCACGCTGGCAGGGGCAGTGCAGCGC
CTGTCACGCCTGGAACACCATCACCGAGGTGCGCATTGCCGCCTCGCCCGCGGCTGCGCGTAACGAGCGCCTGAGTGGTT
ATGCCGGTAGCGCCGGCACCAGCCGGGTGCAGAAGCTCTCTGAAATCAGCCTGGAGGCGTTACCGCGCTTCTCGACCAGC
TTCAAAGAGTTTGACCGGGTGCTGGGCGGCGGGGTGGTGCCGGGCAGCGCCATTCTGATTGGCGGCAGCCCCGGCGCAGG
CAAATCTACGCTGCTGCTGCAGGTTATGTGCCGGTTGTCAGAGGGGATGAAAACCCTGTATGTCACCGGTGAAGAGTCAC
TGCAGCAGGTGGCGATGCGCGCCCATCGTCTGGGATTACCCACCGAAAATGTGAATATGCTGTCGGAAACCAGCATTGAG
CAGATCTGCCTGATCGCCGAACAGGAGCAGCCGCAACTGATGGTGATCGACTCGATCCAGGTGATGCACATGGCGGAGAT
CCAGTCATCGCCGGGCAGCGTCGCCCAGGTGCGTGAAACCGCCGCTTACCTGACGCGCTTCGCCAAGACGCGCGGCGTGG
CGATCATCATGGTTGGTCACGTTACCAAAGATGGCTCCCTGGCCGGACCGAAAGTGCTGGAACACTGTATCGACTGTTCG
GTGCTGCTGGATGGCGATGCCGATTCCCGCTTCCGCACCCTGCGCAGTCATAAAAACCGCTTCGGCGCGGTCAATGAACT
GGGTGTGTTTGCCATGACCGAGCAGGGCATGCGTGAAGTCAGCAACCCGTCAGCTATTTTCCTGTCGCGCGGCGAAGAGA
TCACCTCGGGCAGTTCGGTGATGGTGCTGTGGGAGGGAACGCGACCGCTGCTGGTGGAGATTCAGGCGCTGGTCGATCAC
TCAATGATGGGCAATCCACGCCGCGTGGCGGTAGGTCTGGAGCAGAACCGTCTGGCGATTCTGCTGGCGGTGCTGCACCG
TCATGGCGGATTGCAGATGGCGGATCAGGATGTGTTCGTTAACGTGGTCGGCGGCGTCAAAGTCACCGAAACCAGTGCAG
ACCTGGCGCTGATGCTGTCGATGGTGTCGAGCCTGCGCGATCGTCCGTTGCCGCAGGATCTGGTGATCTTCGGCGAAGTG
GGACTGGCGGGCGAAATCCGTCCGGTGCCCAGCGGTCAGGAGCGCATCGCTGAAGCGGCGAAGCATGGCTTCAAACGCGC
CATTGTGCCGGCAGGGAATGCACCGAAAAAACCGATTGCCGGGATGCAGGTTTTCAGCGCGAAGAAGCTGGCCGATGCGC
TGGCGATTCTGGACGATCTGTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(347-433)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

AAA domain (AAA_25)

(87-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.373

100

0.485
  radA Streptococcus mitis NCTC 12261

44.82

96.522

0.433
  radA Streptococcus pneumoniae Rx1

45.244

93.696

0.424
  radA Streptococcus pneumoniae D39

45.244

93.696

0.424
  radA Streptococcus pneumoniae R6

45.244

93.696

0.424
  radA Streptococcus pneumoniae TIGR4

45.244

93.696

0.424
  radA Streptococcus mitis SK321

45.244

93.696

0.424