Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OCV20_RS01110 Genome accession   NZ_AP025470
Coordinates   242026..243030 (-) Length   334 a.a.
NCBI ID   WP_017103629.1    Uniprot ID   A0A0T7DQF5
Organism   Vibrio coralliirubri strain DSM 27495     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 237026..248030
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV20_RS01080 zapB 237173..237415 (+) 243 WP_008219652.1 cell division protein ZapB -
  OCV20_RS01085 rraA 237526..238044 (-) 519 WP_017071322.1 ribonuclease E activity regulator RraA -
  OCV20_RS01090 - 238118..239035 (-) 918 WP_050619834.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  OCV20_RS01095 hslU 239191..240531 (-) 1341 WP_086775578.1 HslU--HslV peptidase ATPase subunit -
  OCV20_RS01100 hslV 240590..241138 (-) 549 WP_004729692.1 ATP-dependent protease subunit HslV -
  OCV20_RS01105 - 241364..241903 (-) 540 WP_086775577.1 SPOR domain-containing protein -
  OCV20_RS01110 cytR 242026..243030 (-) 1005 WP_017103629.1 DNA-binding transcriptional regulator CytR Regulator
  OCV20_RS01115 priA 243271..245472 (-) 2202 WP_086775576.1 primosomal protein N' -
  OCV20_RS01120 rpmE 245805..246023 (+) 219 WP_004737142.1 50S ribosomal protein L31 -
  OCV20_RS01125 - 246357..247646 (+) 1290 WP_017061144.1 malic enzyme-like NAD(P)-binding protein -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 36541.09 Da        Isoelectric Point: 6.4911

>NTDB_id=91768 OCV20_RS01110 WP_017103629.1 242026..243030(-) (cytR) [Vibrio coralliirubri strain DSM 27495]
MATMKDVAQLAGVSTATVSRALMNPEKVSVSTRKRVETAVLEAGYSPNTLARNLRRNESKTIITIVPDICDPYFAEIIRG
IEDAAVENDYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDHPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLAQLGHKRIAQISGPVSATLCKFRQQGYQQALRRAGVSMNPAYSTVGDFTFEAGAQAVRQLLALPEQPTA
IFCHNDAMAIGAIQEAKKLGLRVPQDLSIVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLDLLKGNDVQAGSRLLE
AKLVVRGSTAPPRM

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=91768 OCV20_RS01110 WP_017103629.1 242026..243030(-) (cytR) [Vibrio coralliirubri strain DSM 27495]
ATGGCGACAATGAAGGATGTTGCCCAGCTAGCAGGCGTCTCAACAGCCACGGTATCACGTGCATTGATGAACCCTGAGAA
AGTCTCAGTTTCAACTCGCAAACGAGTGGAAACAGCAGTACTTGAAGCTGGATACTCACCCAATACATTAGCTAGAAACT
TACGTCGCAACGAATCAAAAACCATCATCACTATTGTTCCTGATATCTGTGACCCTTATTTCGCCGAGATCATTCGTGGT
ATCGAAGATGCCGCAGTAGAAAATGATTACCTTGTTCTACTGGGTGATAGCGGCCAGCAAAAGAAGCGCGAGTCTTCATT
TGTTAACTTAGTTTTCACCAAACAAGCTGACGGCATGTTGCTACTGGGCACGGACCATCCGTTTGATGTCAGCAAACCTG
AACAAAAGAATTTACCGCCGATGGTGATGGCGTGTGAGTTTGCCCCTGAACTTGAACTGCCTACGGTACACATCGATAAC
CTGACCTCTGCCTTTGAAGCGGTTAACTACCTAGCTCAGTTAGGTCATAAACGCATCGCTCAAATCTCAGGCCCAGTATC
TGCAACGCTGTGTAAGTTCCGTCAACAAGGCTACCAACAAGCGCTGCGCCGCGCTGGAGTCTCTATGAATCCAGCTTACA
GTACGGTAGGTGACTTCACCTTTGAAGCGGGCGCTCAAGCAGTTCGTCAATTACTGGCACTGCCTGAACAACCAACGGCT
ATCTTCTGTCACAACGATGCGATGGCAATTGGCGCGATTCAAGAAGCGAAGAAGCTGGGCTTGCGCGTTCCTCAAGATCT
ATCGATTGTCGGCTTCGATGACATCCAATTCGCACAATACTGCGATCCACCGCTAACCACTATTTCTCAGCCTCGTTATG
AGATTGGACGCCAAGCGATGTTGATGATGCTTGATCTATTGAAGGGCAACGATGTGCAAGCAGGTTCGCGTCTGCTTGAA
GCTAAATTAGTGGTTCGAGGCAGTACAGCGCCACCTCGAATGTAA

Domains

Predicted by InterproScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-329)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0T7DQF5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

89.759

99.401

0.892
  cytR Vibrio parahaemolyticus RIMD 2210633

87.688

99.701

0.874

Multiple sequence alignment