Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   AB0R82_RS17990 Genome accession   NZ_CP160220
Coordinates   3481235..3484108 (-) Length   957 a.a.
NCBI ID   WP_003228057.1    Uniprot ID   A0ABU0VAU0
Organism   Bacillus subtilis strain JM553     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3476235..3489108
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R82_RS17960 (AB0R82_17960) yvlD 3477398..3477757 (-) 360 WP_003228066.1 phage holin family protein -
  AB0R82_RS17965 (AB0R82_17965) yvlC 3477759..3477956 (-) 198 WP_003228065.1 PspC domain-containing protein -
  AB0R82_RS17970 (AB0R82_17970) yvlB 3477961..3479058 (-) 1098 WP_003228061.1 DUF4097 family beta strand repeat-containing protein -
  AB0R82_RS17975 (AB0R82_17975) yvlA 3479083..3479409 (-) 327 WP_032726939.1 protein YvlA -
  AB0R82_RS17980 (AB0R82_17980) - 3479627..3479857 (+) 231 WP_003235419.1 hypothetical protein -
  AB0R82_RS17985 (AB0R82_17985) hag 3480056..3480895 (-) 840 WP_198878465.1 flagellin Hag -
  AB0R82_RS17990 (AB0R82_17990) uvrA 3481235..3484108 (-) 2874 WP_003228057.1 excinuclease ABC subunit UvrA Machinery gene
  AB0R82_RS17995 (AB0R82_17995) uvrB 3484116..3486101 (-) 1986 WP_003228054.1 excinuclease ABC subunit UvrB Machinery gene
  AB0R82_RS18000 (AB0R82_18000) csbA 3486287..3486517 (-) 231 WP_003228053.1 CsbA family protein -
  AB0R82_RS18005 (AB0R82_18005) - 3486659..3486787 (-) 129 WP_284690403.1 hypothetical protein -

Sequence

Protein


Download         Length: 957 a.a.        Molecular weight: 106032.21 Da        Isoelectric Point: 6.2081

>NTDB_id=917656 AB0R82_RS17990 WP_003228057.1 3481235..3484108(-) (uvrA) [Bacillus subtilis strain JM553]
MAMDRIEVKGARAHNLKNIDVTIPRDQLVVVTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDVDAIEG
LSPAISIDQKTTSRNPRSTVGTVTEIYDYLRLLYARVGKPHCPEHGIEITSQTIEQMVDRILEYPERTKLQVLAPIVSGR
KGAHVKVLEQIRKQGYVRVRIDGEMAELSDDIELEKNKKHSIEVVIDRIVVKEGVAARLSDSLETALRLGEGRVMIDVIG
EEELMFSEHHACPHCGFSIGELEPRLFSFNSPFGACPTCDGLGMKLEVDADLVIPNQDLSLKENAVAPWTPISSQYYPQL
LEAVCTHYGIDMDVPVKDLPKHQLDKVLYGSGDDLIYFRYENDFGQIREGEIQFEGVLRNIERRYKETGSDFIREQMEQY
MSQKSCPTCKGYRLKKEALAVLIDGRHIGKITELSVADALAFFKDLTLSEKDMQIANLILREIVERLSFLDKVGLDYLTL
SRAAGTLSGGEAQRIRLATQIGSRLSGVLYILDEPSIGLHQRDNDRLISALKNMRDLGNTLIVVEHDEDTMMAADYLIDI
GPGAGIHGGQVISAGTPEEVMEDPNSLTGSYLSGKKFIPLPPERRKPDGRYIEIKGASENNLKKVNAKFPLGTFTAVTGV
SGSGKSTLVNEILHKALAQKLHKAKAKPGSHKEIKGLDHLDKVIDIDQAPIGRTPRSNPATYTGVFDDIRDVFAQTNEAK
VRGYKKGRFSFNVKGGRCEACRGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYKGKSISDVLDMTVEDALSFFEN
IPKIKRKLQTLYDVGLGYITLGQPATTLSGGEAQRVKLASELHKRSTGRTLYILDEPTTGLHVDDIARLLVVLQRLVDNG
DTVLVIEHNLDIIKTADYIVDLGPEGGAGGGTIVASGTPEEITEVEESYTGRYLKPVIERDKTRMKSLLKAKETATS

Nucleotide


Download         Length: 2874 bp        

>NTDB_id=917656 AB0R82_RS17990 WP_003228057.1 3481235..3484108(-) (uvrA) [Bacillus subtilis strain JM553]
ATGGCTATGGATCGGATAGAGGTGAAGGGAGCCAGGGCGCATAACCTGAAAAATATAGATGTAACGATTCCGAGAGATCA
GCTTGTCGTTGTCACGGGTTTGTCCGGATCAGGTAAATCCTCCCTTGCCTTTGACACGATATATGCTGAAGGACAGAGAC
GGTATGTCGAGTCGCTGTCTGCTTATGCCCGCCAGTTTTTAGGGCAAATGGATAAGCCTGATGTGGATGCAATTGAGGGG
CTCTCTCCCGCCATCAGCATTGATCAGAAAACAACAAGCCGCAATCCGAGGTCTACTGTCGGTACGGTAACTGAGATTTA
TGATTATCTGCGTCTTTTATATGCGAGAGTAGGGAAGCCTCATTGTCCGGAGCACGGAATTGAGATTACATCCCAGACTA
TCGAGCAAATGGTGGACAGAATTCTGGAATACCCGGAACGGACGAAGCTTCAGGTGCTGGCGCCGATTGTCTCGGGCCGA
AAAGGCGCTCATGTCAAAGTGCTTGAACAGATTAGAAAACAAGGCTATGTCAGAGTCAGAATTGACGGCGAGATGGCTGA
GCTTTCCGACGATATCGAATTAGAAAAGAACAAGAAGCATTCCATTGAGGTAGTCATTGACCGGATTGTCGTGAAAGAAG
GCGTGGCAGCCCGGCTGTCAGATTCATTGGAAACGGCGCTCCGTTTAGGTGAAGGACGGGTTATGATCGATGTCATCGGT
GAGGAAGAGCTGATGTTCAGCGAGCATCATGCCTGTCCGCACTGCGGATTTTCAATTGGTGAGCTTGAGCCGCGTCTGTT
TTCGTTTAACAGTCCGTTCGGGGCGTGTCCGACGTGTGACGGTCTCGGAATGAAGCTTGAAGTGGATGCCGATCTTGTCA
TCCCCAATCAAGATTTGTCATTAAAGGAGAATGCGGTCGCCCCTTGGACACCGATCAGCTCACAATATTATCCTCAGCTG
CTTGAGGCAGTCTGCACCCACTACGGGATTGATATGGATGTGCCGGTCAAAGATTTGCCGAAGCATCAACTGGATAAAGT
GCTGTACGGCAGCGGAGATGACCTGATTTATTTCCGATATGAAAATGATTTTGGACAAATCCGCGAAGGTGAAATTCAAT
TTGAAGGCGTATTGCGCAACATTGAAAGACGCTATAAGGAGACAGGATCCGATTTCATACGTGAGCAAATGGAGCAGTAT
ATGTCTCAGAAGTCTTGTCCGACGTGCAAAGGCTATCGGTTAAAGAAAGAGGCGCTTGCCGTACTGATTGACGGCCGCCA
CATCGGAAAAATTACCGAGCTGTCTGTCGCCGACGCACTTGCCTTCTTTAAAGATCTTACCCTTTCTGAGAAGGATATGC
AGATCGCCAATTTGATTTTGCGCGAAATTGTGGAGCGCTTAAGCTTTCTGGACAAAGTCGGCCTCGATTACCTGACATTG
AGCAGGGCAGCGGGTACATTGTCCGGGGGAGAGGCGCAGCGCATCAGGCTGGCGACTCAAATTGGCTCGCGTTTATCCGG
TGTGCTTTATATTTTAGATGAGCCGTCTATCGGTCTGCATCAGCGTGATAACGACCGCTTGATCAGCGCTCTGAAAAATA
TGAGAGACCTCGGGAACACGCTGATTGTTGTCGAACATGATGAGGACACGATGATGGCAGCAGATTATTTAATAGATATT
GGACCGGGAGCCGGCATTCACGGCGGACAGGTGATATCTGCGGGTACGCCGGAAGAAGTGATGGAAGATCCAAACTCATT
AACGGGCAGCTATTTATCAGGGAAAAAGTTTATCCCATTGCCTCCTGAAAGAAGAAAGCCGGACGGACGTTACATTGAAA
TTAAAGGTGCATCAGAAAACAACCTGAAAAAAGTGAATGCCAAGTTCCCGCTTGGGACGTTTACAGCAGTTACAGGTGTT
TCCGGTTCAGGAAAGAGTACACTCGTTAATGAAATTTTGCATAAGGCGCTGGCGCAAAAGCTTCATAAAGCGAAAGCGAA
GCCCGGCAGCCATAAAGAGATTAAAGGTTTGGATCATTTAGATAAAGTCATTGACATTGACCAGGCGCCAATCGGAAGAA
CGCCGAGATCCAACCCTGCGACATACACCGGTGTATTTGATGACATTCGTGATGTATTCGCGCAGACAAATGAAGCGAAG
GTCCGCGGTTATAAAAAAGGCCGTTTCAGCTTCAACGTGAAGGGCGGACGATGTGAAGCCTGCCGCGGAGACGGGATTAT
TAAAATTGAAATGCACTTCCTTCCTGACGTATACGTTCCATGCGAGGTGTGTCACGGCAAACGCTATAACCGTGAAACGC
TTGAAGTGACGTACAAAGGAAAAAGCATCTCTGATGTGCTTGATATGACGGTTGAAGATGCTCTTTCTTTCTTTGAAAAT
ATCCCGAAAATCAAACGCAAGCTCCAAACCCTTTATGATGTTGGTTTAGGTTATATTACGCTCGGCCAGCCGGCGACGAC
CTTGTCAGGCGGAGAAGCGCAGCGCGTGAAGCTCGCGTCAGAGCTGCACAAACGCTCAACCGGACGCACGCTCTACATTT
TAGATGAGCCGACGACAGGTTTGCATGTCGACGATATCGCCAGGCTTCTTGTCGTGCTGCAACGGTTGGTAGACAACGGA
GACACTGTACTGGTTATTGAGCACAACCTTGATATCATTAAGACGGCCGATTACATTGTGGATTTGGGCCCGGAAGGCGG
AGCCGGAGGCGGAACCATTGTCGCGTCTGGAACGCCTGAGGAAATCACTGAAGTGGAAGAATCGTATACAGGCCGTTATT
TGAAGCCTGTTATCGAACGTGACAAAACACGCATGAAATCGCTCTTGAAAGCGAAAGAAACAGCTACATCTTAA

Domains

Predicted by InterProScan.

UvrA interaction domain (UvrA_inter)

(132-238)

ABC transporter (ABC_tran)

(622-858)

UvrA DNA-binding domain (UvrA_DNA-bind)

(289-399)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

69.198

97.701

0.676
  uvrA Streptococcus pneumoniae TIGR4

69.198

97.701

0.676
  uvrA Streptococcus pneumoniae D39

69.198

97.701

0.676