Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   OCV52_RS18620 Genome accession   NZ_AP025466
Coordinates   595792..596886 (-) Length   364 a.a.
NCBI ID   WP_102426274.1    Uniprot ID   A0A7V7NVT2
Organism   Vibrio chagasii strain LMG 21353     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 590792..601886
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV52_RS18600 - 591528..591836 (+) 309 WP_137407071.1 DUF1289 domain-containing protein -
  OCV52_RS18605 - 591937..592287 (-) 351 WP_137407070.1 HopJ type III effector protein -
  OCV52_RS18610 - 592484..593142 (+) 659 Protein_544 PilZ domain-containing protein -
  OCV52_RS18615 luxQ 593222..595792 (-) 2571 WP_137407069.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  OCV52_RS18620 luxP 595792..596886 (-) 1095 WP_102426274.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  OCV52_RS18625 - 597194..597508 (-) 315 WP_102425585.1 GIY-YIG nuclease family protein -
  OCV52_RS18630 - 597509..598165 (-) 657 WP_137407068.1 YceH family protein -
  OCV52_RS18635 - 598229..598429 (-) 201 WP_063523833.1 hypothetical protein -
  OCV52_RS18640 - 598625..598939 (+) 315 WP_004742367.1 DUF496 family protein -
  OCV52_RS18645 - 599085..599711 (+) 627 WP_137407067.1 D-Ala-D-Ala carboxypeptidase family metallohydrolase -
  OCV52_RS18650 - 599877..600113 (+) 237 WP_061031252.1 hypothetical protein -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 41295.44 Da        Isoelectric Point: 5.1585

>NTDB_id=91765 OCV52_RS18620 WP_102426274.1 595792..596886(-) (luxP) [Vibrio chagasii strain LMG 21353]
MKRLLMLFGLAVFSASALSHGTHVLNGYWEYQDYLSNFPEQKALTDKMVQAVQNHPVPLKRVQDEPITISVVYPGQQISD
YWVRNIQAFEKRLDKLRINYQINQVFTRVNADLAQQSISLQEAIENKTDYLIFTLDTTRHRKFIEHVLSSTDTKLILQNI
TTPVRAWADRQPFMYVGFDHATGSLKLANYFKEVSKPNSKYSVLYRSEGYISDARGDTFIHDVNSDTNFDLKSSFYTRSD
KESGYRAAKISIENDKDLDFIYACATDVALGAVDAIRESGRDILVNGWGGGSAELEAIERGELDVTVMRMNDDTGIAMAE
AIKWDLAGEAVPTVYSGDFEIVTKEDSPERISELKQRAFRYSGQ

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=91765 OCV52_RS18620 WP_102426274.1 595792..596886(-) (luxP) [Vibrio chagasii strain LMG 21353]
ATGAAACGTTTATTGATGTTGTTTGGACTAGCCGTATTTTCTGCGTCCGCTCTCTCCCACGGAACCCATGTCCTTAACGG
ATATTGGGAGTACCAAGATTACCTTTCTAACTTTCCTGAACAAAAAGCCTTAACCGATAAAATGGTTCAGGCTGTGCAAA
ACCACCCCGTTCCACTGAAACGAGTCCAGGATGAGCCGATCACGATTTCTGTCGTGTATCCGGGCCAACAAATCTCTGAT
TATTGGGTTCGTAACATCCAAGCTTTTGAAAAGCGACTTGATAAACTGAGAATTAATTATCAAATTAACCAAGTGTTTAC
GAGAGTGAACGCGGATCTCGCACAGCAAAGTATCTCGTTACAAGAAGCGATAGAAAATAAAACCGATTATTTGATCTTTA
CGCTGGACACGACGCGCCATCGTAAATTTATTGAGCACGTATTGAGCTCTACTGATACCAAACTTATTCTGCAGAACATC
ACTACGCCAGTCCGAGCATGGGCTGATAGACAACCCTTCATGTATGTTGGTTTTGACCATGCAACGGGCAGTTTAAAATT
AGCGAATTACTTCAAAGAAGTCAGCAAACCCAACAGCAAATACTCGGTTCTGTACCGCTCAGAAGGTTATATTAGTGATG
CCCGTGGTGATACCTTCATTCACGATGTAAACAGTGATACGAACTTTGATTTAAAATCCTCTTTTTACACAAGATCGGAC
AAAGAGAGTGGTTACCGAGCGGCTAAAATCAGCATAGAGAACGATAAAGACCTAGACTTTATTTATGCATGTGCAACCGA
TGTCGCTTTAGGTGCGGTGGATGCGATTCGAGAATCGGGTCGAGATATCTTAGTTAATGGCTGGGGCGGTGGCTCTGCTG
AACTTGAAGCGATTGAAAGAGGTGAACTTGATGTCACTGTGATGCGTATGAACGATGATACGGGTATCGCAATGGCAGAG
GCTATTAAGTGGGACCTTGCCGGGGAAGCCGTTCCTACTGTTTACTCAGGTGATTTTGAAATCGTGACTAAAGAAGACTC
CCCAGAACGCATTTCTGAACTGAAACAGCGAGCATTTAGATACTCAGGTCAATAA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7V7NVT2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

63.388

100

0.637

Multiple sequence alignment