Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OCV52_RS14525 Genome accession   NZ_AP025465
Coordinates   3141470..3142474 (+) Length   334 a.a.
NCBI ID   WP_137406912.1    Uniprot ID   A0A7V7NW90
Organism   Vibrio chagasii strain LMG 21353     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3136470..3147474
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV52_RS14510 - 3136856..3138145 (-) 1290 WP_137406910.1 malic enzyme-like NAD(P)-binding protein -
  OCV52_RS14515 rpmE 3138479..3138697 (-) 219 WP_004737142.1 50S ribosomal protein L31 -
  OCV52_RS14520 priA 3139028..3141229 (+) 2202 WP_137406911.1 primosomal protein N' -
  OCV52_RS14525 cytR 3141470..3142474 (+) 1005 WP_137406912.1 DNA-binding transcriptional regulator CytR Regulator
  OCV52_RS14530 ftsN 3142597..3143136 (+) 540 WP_032498450.1 cell division protein FtsN -
  OCV52_RS14535 hslV 3143339..3143887 (+) 549 WP_004737138.1 ATP-dependent protease subunit HslV -
  OCV52_RS14540 hslU 3143943..3145283 (+) 1341 WP_137406913.1 HslU--HslV peptidase ATPase subunit -
  OCV52_RS14545 - 3145473..3146390 (+) 918 WP_137406914.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  OCV52_RS14550 rraA 3146464..3146982 (+) 519 WP_004737135.1 ribonuclease E activity regulator RraA -
  OCV52_RS14555 zapB 3147078..3147320 (-) 243 WP_004737134.1 cell division protein ZapB -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 36521.07 Da        Isoelectric Point: 6.8452

>NTDB_id=91756 OCV52_RS14525 WP_137406912.1 3141470..3142474(+) (cytR) [Vibrio chagasii strain LMG 21353]
MATMKDVAQLAGVSTATVSRALMNPEKVSVSTRKRVETAVLEAGYSPNTLARNLRRNESKTIITIVPDICDPYFAEIIRG
IEDAAVENDYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDHPFDVSKSEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLAQLGHKRIAQISGPMSATLCKFRQQGYQQALRRAGVSMNPAYSTIGDFTFKAGAQAVRQLLALPEQPTA
IFCHNDAMAIGAIQEAKKLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLDLLKGNDVQAGSRLLE
ASLVVRGSTAPPRM

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=91756 OCV52_RS14525 WP_137406912.1 3141470..3142474(+) (cytR) [Vibrio chagasii strain LMG 21353]
ATGGCGACAATGAAGGATGTTGCCCAGCTAGCAGGCGTCTCAACGGCTACCGTATCACGAGCTTTGATGAATCCTGAGAA
AGTCTCAGTTTCGACTCGCAAACGAGTGGAAACAGCCGTACTTGAAGCTGGATACTCACCCAATACATTAGCTAGAAATT
TACGTCGCAACGAATCAAAAACCATCATTACTATCGTTCCTGATATCTGTGACCCGTATTTCGCAGAAATCATTCGTGGT
ATCGAAGATGCTGCTGTCGAAAATGATTACCTCGTTCTGCTGGGTGACAGCGGCCAACAGAAAAAACGCGAGTCTTCGTT
TGTTAATCTCGTCTTCACCAAACAAGCAGATGGCATGCTACTACTAGGCACCGACCACCCGTTCGATGTCAGCAAGTCTG
AGCAAAAGAACCTACCTCCTATGGTAATGGCGTGTGAGTTCGCACCAGAGCTAGAACTGCCTACGGTACACATCGATAAC
CTGACTTCTGCATTCGAAGCCGTGAACTACCTTGCTCAATTGGGTCATAAGCGTATCGCTCAAATCTCTGGCCCAATGTC
AGCAACCCTATGTAAGTTCCGTCAGCAAGGTTACCAACAAGCGCTGCGTCGTGCTGGCGTGTCAATGAACCCAGCCTACA
GCACCATCGGTGATTTTACCTTCAAAGCGGGTGCTCAAGCGGTTCGTCAACTGTTAGCGCTACCAGAGCAGCCGACCGCT
ATTTTCTGTCACAACGATGCGATGGCAATTGGTGCGATTCAAGAAGCCAAGAAACTCGGTTTACGAGTGCCTCAAGATTT
ATCTGTTGTTGGCTTTGATGATATTCAATTCGCTCAGTACTGCGATCCACCGCTAACCACCATTTCTCAACCTCGTTATG
AGATTGGACGCCAAGCAATGTTGATGATGCTAGACCTACTAAAAGGCAACGATGTGCAAGCAGGTTCGCGTCTGCTAGAA
GCCAGCCTAGTGGTTCGAGGCAGTACTGCACCACCTCGAATGTAA

Domains

Predicted by InterproScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-329)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7V7NW90

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

89.157

99.401

0.886
  cytR Vibrio parahaemolyticus RIMD 2210633

87.688

99.701

0.874

Multiple sequence alignment