Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcE   Type   Machinery gene
Locus tag   AB0R82_RS05450 Genome accession   NZ_CP160220
Coordinates   1048476..1051367 (+) Length   963 a.a.
NCBI ID   WP_198878827.1    Uniprot ID   -
Organism   Bacillus subtilis strain JM553     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1043476..1056367
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R82_RS05425 (AB0R82_05425) yhaR 1043890..1044657 (+) 768 WP_029726320.1 enoyl-CoA hydratase -
  AB0R82_RS05430 (AB0R82_05430) yhzD 1044678..1044863 (-) 186 WP_015715596.1 YhzD family protein -
  AB0R82_RS05435 (AB0R82_05435) yhaQ 1044990..1045886 (+) 897 WP_003233262.1 ABC transporter ATP-binding protein -
  AB0R82_RS05440 (AB0R82_05440) yhaP 1045879..1047138 (+) 1260 WP_003244912.1 ABC transporter permease -
  AB0R82_RS05445 (AB0R82_05445) yhaO 1047245..1048471 (+) 1227 WP_024571671.1 exonuclease SbcCD subunit D -
  AB0R82_RS05450 (AB0R82_05450) sbcE 1048476..1051367 (+) 2892 WP_198878827.1 DNA repair/recombination ATPase SbcE Machinery gene
  AB0R82_RS05455 (AB0R82_05455) yhaM 1051441..1052385 (+) 945 WP_003245698.1 3'-5' exoribonuclease YhaM -
  AB0R82_RS05460 (AB0R82_05460) yhaL 1052510..1052722 (+) 213 WP_003233252.1 sporulation protein YhaL -
  AB0R82_RS05465 (AB0R82_05465) prsA 1052763..1053638 (-) 876 WP_032725314.1 peptidylprolyl isomerase -
  AB0R82_RS05470 (AB0R82_05470) yhzE1 1053798..1053884 (+) 87 WP_003327753.1 sporulation protein YhzE1 -
  AB0R82_RS05475 (AB0R82_05475) yhzE2 1054009..1054095 (+) 87 WP_003155248.1 sporulation protein YhzE2 -
  AB0R82_RS05480 (AB0R82_05480) - 1054148..1054330 (-) 183 WP_024571667.1 hypothetical protein -
  AB0R82_RS05485 (AB0R82_05485) yhaJ 1054438..1054956 (-) 519 WP_198878828.1 DUF3267 domain-containing protein -
  AB0R82_RS05490 (AB0R82_05490) yhaI 1055164..1055505 (+) 342 WP_009966921.1 YhaI family protein -
  AB0R82_RS05495 (AB0R82_05495) scoC 1055502..1056113 (-) 612 WP_003239501.1 HTH-type transcriptional regulator Hpr -

Sequence

Protein


Download         Length: 963 a.a.        Molecular weight: 111231.38 Da        Isoelectric Point: 6.2967

>NTDB_id=917559 AB0R82_RS05450 WP_198878827.1 1048476..1051367(+) (sbcE) [Bacillus subtilis strain JM553]
MTALRIISLHIYQYGKFSNRTFHFSASPVQVIYGLNEAGKTTMMSFIESMLFGFPKTKKYEPKTGGVYGGVLEAEHPEYG
VLKIERTKGTAEKLSVYTEKGEVKQGDVLKQLFQGTDRSLYKAIYSFDVFGLQEIHAFNRDKIGEFLLFSSLFGAEAVSK
LDSRLTKESERLYKPNGRNPQLNQELETLKRLAVKLKQAEAEEAGYHQLLEEKRTLEARLAAAEIELKETAGHIRMIEGA
IERKPLLNEKATLEQVIAEFPEHAGQFPVDGLHQLEKYESHLHPKSAQLEALRVKMAELDKQRQKLIPDKELLAKETLIQ
ELSAAFHMYQSWGEKLAAIQAQLRQTSAQTAAGLEQLNKTDENELLNMNTSYDYEWQLQQAVQQYVQARDRKRQLDETFE
LARQELEDAEKAVRAASSAILENSQRKDKEAALRAYDETQGQHQEQAKLREQLTFFERQQAKQKKTVIAAGMLFIVLFSL
LQQWIPAISFGAALIVYWLVSGKSSSRNSRGTRQPMTDISPAEAEMLREALWEDDRNKQHLLTQRAALQQKEAAYERVIQ
QFEQWEAEMAPSFTQVERFMNELGFKEDPSFLLDAYSLMKDVKKEVKKKHELTIEAGRLKKHRRTFEERVSMLRPMNQSQ
DISISDALHTLRKNIEREKEIEKQKKEIETDIHYTTEQMIELEQEIQYFLAQIEQLFAAAAAKDRDAFFAIADISRQLKD
TENKLHHVNAQLQGGYPEELELADSNTLSELKDKQFVENERKERLTEEIEQLRSQIALLSVKQEQLEASGMVSDLKLQTE
MQKERVKETAKKWASIQMVKQVIRNKLERHKKIELPRLLETAGEFFRPLTDGNYQTIYFSETDDSIMVMHRDGTVYHAEE
LSQGTCEQLYTAIRFALAVTRQDGSKLPFQLDDSFVHFDQERLKRVLHVLYDLSEGGRQILYFTCHEHVKDAFHSSQIIH
LVS

Nucleotide


Download         Length: 2892 bp        

>NTDB_id=917559 AB0R82_RS05450 WP_198878827.1 1048476..1051367(+) (sbcE) [Bacillus subtilis strain JM553]
GTGACAGCTTTGCGAATTATATCTTTACATATCTACCAATATGGAAAATTTTCCAATCGGACCTTTCACTTTTCCGCCTC
TCCTGTCCAAGTAATTTACGGATTAAATGAGGCAGGAAAAACGACGATGATGTCATTTATTGAAAGTATGCTGTTCGGTT
TTCCAAAAACAAAAAAATATGAACCGAAAACAGGCGGTGTCTACGGCGGTGTTCTTGAAGCTGAACATCCTGAATATGGG
GTGCTGAAGATCGAACGGACGAAAGGGACTGCCGAAAAACTAAGCGTGTACACAGAAAAGGGCGAAGTAAAGCAGGGAGA
TGTTTTAAAGCAGCTGTTCCAGGGCACAGACAGGTCGTTGTACAAAGCCATATATTCGTTTGACGTATTCGGGCTGCAGG
AAATTCACGCCTTTAATCGGGATAAGATAGGGGAATTTTTGCTCTTTTCCAGCTTGTTTGGTGCTGAAGCCGTATCAAAG
CTTGATTCAAGGCTGACGAAGGAAAGCGAAAGGCTCTATAAACCAAATGGGCGAAACCCTCAATTGAATCAGGAGCTGGA
AACGCTTAAGCGGCTGGCAGTTAAGCTAAAACAGGCTGAAGCAGAGGAAGCGGGCTATCATCAGCTTCTCGAGGAAAAAC
GAACGCTTGAAGCCCGCCTTGCAGCCGCGGAAATCGAATTGAAAGAGACGGCGGGACATATCCGAATGATTGAGGGAGCG
ATTGAGCGAAAGCCGCTGCTAAATGAAAAAGCGACACTCGAACAGGTGATTGCAGAATTTCCGGAACACGCAGGACAATT
TCCTGTTGACGGACTGCATCAGCTGGAAAAATATGAATCCCATCTTCACCCGAAATCAGCACAGCTTGAGGCGCTTCGGG
TGAAGATGGCGGAGTTGGACAAACAGAGGCAAAAGCTTATCCCCGATAAAGAACTATTGGCGAAAGAAACGCTGATACAA
GAACTTTCGGCAGCGTTTCATATGTACCAATCCTGGGGAGAAAAGCTGGCAGCCATTCAGGCACAGCTGCGCCAGACGTC
TGCACAGACAGCGGCAGGGCTGGAACAGCTCAATAAAACGGATGAAAATGAGCTCCTGAATATGAACACCTCATATGATT
ATGAATGGCAGCTTCAGCAAGCGGTGCAGCAATATGTACAGGCAAGAGACAGAAAACGGCAGCTTGACGAGACGTTTGAA
CTTGCCCGGCAAGAGCTGGAAGACGCGGAAAAGGCCGTTCGTGCCGCTTCGTCCGCGATTCTTGAAAACAGCCAAAGAAA
AGATAAAGAAGCAGCTCTTAGAGCATATGATGAAACACAGGGGCAGCACCAAGAGCAAGCGAAGCTCAGAGAACAGCTAA
CGTTTTTTGAAAGACAGCAGGCTAAACAGAAAAAGACTGTCATTGCAGCTGGTATGTTGTTCATCGTTCTCTTTTCTCTG
CTGCAGCAATGGATTCCCGCCATAAGTTTCGGCGCTGCACTTATTGTGTATTGGCTTGTATCAGGAAAATCGTCTTCTCG
AAACAGCCGAGGGACAAGACAGCCCATGACGGATATTTCACCAGCAGAAGCTGAAATGCTTAGAGAAGCGTTATGGGAGG
ATGACCGCAATAAGCAGCACCTTCTCACACAGCGTGCAGCGCTCCAGCAAAAGGAGGCGGCGTATGAAAGGGTCATCCAG
CAGTTTGAACAGTGGGAAGCCGAAATGGCGCCGTCCTTTACACAGGTTGAGCGTTTTATGAATGAGCTCGGATTTAAGGA
AGATCCATCATTTTTGCTTGATGCATATAGCTTAATGAAGGATGTTAAAAAAGAAGTGAAGAAAAAGCATGAGCTGACCA
TTGAAGCAGGCAGGCTGAAAAAGCACCGGAGAACATTCGAAGAACGCGTCAGTATGCTTCGTCCCATGAATCAGAGTCAG
GATATCTCCATTTCGGACGCCCTTCACACATTGCGGAAAAACATTGAACGTGAAAAAGAAATTGAGAAGCAAAAAAAGGA
AATTGAAACAGATATTCATTATACAACGGAACAGATGATTGAACTTGAGCAAGAAATACAGTATTTCCTCGCACAGATTG
AACAATTATTTGCCGCGGCTGCTGCAAAAGACAGAGATGCGTTTTTTGCCATAGCCGACATCAGCAGGCAATTGAAGGAT
ACGGAGAACAAGCTTCATCACGTAAACGCACAGCTTCAAGGCGGGTACCCGGAGGAACTTGAACTGGCGGATTCCAATAC
GCTTTCTGAATTGAAAGATAAGCAATTTGTTGAGAATGAAAGAAAAGAGCGGCTGACTGAGGAGATCGAGCAGCTCCGCA
GCCAAATCGCACTGCTCTCAGTCAAACAGGAACAATTAGAGGCTTCGGGAATGGTCTCAGACCTCAAGCTTCAAACCGAA
ATGCAAAAAGAACGTGTGAAAGAAACGGCTAAAAAATGGGCCTCCATACAAATGGTCAAACAGGTGATCAGAAACAAATT
GGAGCGGCATAAAAAAATCGAGCTTCCGCGCCTTCTGGAGACGGCAGGAGAATTTTTCCGCCCTCTGACTGACGGAAACT
ACCAAACCATTTATTTTTCCGAAACGGATGATTCGATCATGGTTATGCATCGCGATGGAACTGTCTATCATGCGGAAGAG
CTGTCACAAGGGACCTGTGAACAGCTGTATACAGCGATCCGATTTGCTTTGGCCGTTACACGCCAGGATGGGTCAAAGCT
TCCGTTCCAGCTTGACGACAGTTTTGTTCATTTTGATCAGGAAAGGCTGAAACGTGTATTACATGTTCTGTATGATTTAT
CTGAAGGCGGTAGGCAGATTTTGTATTTTACATGCCATGAGCACGTAAAAGATGCATTTCATAGCAGCCAAATCATCCAT
TTGGTGTCATAA

Domains

Predicted by InterProScan.

AAA domain (AAA_27)

(5-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcE Bacillus subtilis subsp. subtilis str. 168

98.546

100

0.985