Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   AB0R82_RS03865 Genome accession   NZ_CP160220
Coordinates   745362..746492 (+) Length   376 a.a.
NCBI ID   WP_038428548.1    Uniprot ID   -
Organism   Bacillus subtilis strain JM553     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 740362..751492
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R82_RS03840 (AB0R82_03840) - 740378..740683 (-) 306 WP_198878942.1 hypothetical protein -
  AB0R82_RS03845 (AB0R82_03845) - 740805..741197 (-) 393 WP_113713056.1 hypothetical protein -
  AB0R82_RS03850 (AB0R82_03850) - 741804..742979 (-) 1176 Protein_706 T7SS effector LXG polymorphic toxin -
  AB0R82_RS03855 (AB0R82_03855) - 743191..744213 (+) 1023 WP_198878941.1 hypothetical protein -
  AB0R82_RS03860 (AB0R82_03860) - 744356..745198 (+) 843 WP_250629424.1 hypothetical protein -
  AB0R82_RS03865 (AB0R82_03865) rapC 745362..746492 (+) 1131 WP_038428548.1 response regulator aspartate phosphatase RapH Regulator
  AB0R82_RS03870 (AB0R82_03870) phrH 746482..746655 (+) 174 WP_015715465.1 phosphatase RapH inhibitor PhrH -
  AB0R82_RS03875 (AB0R82_03875) yeeI 746815..747534 (+) 720 WP_003233863.1 YebC/PmpR family DNA-binding transcriptional regulator -
  AB0R82_RS03880 (AB0R82_03880) yeeK 747668..748078 (+) 411 WP_366592354.1 spore coat protein YeeK -
  AB0R82_RS03885 (AB0R82_03885) cotJA 748212..748460 (+) 249 WP_003219489.1 spore coat-associated protein CotJA -
  AB0R82_RS03890 (AB0R82_03890) cotJB 748444..748707 (+) 264 WP_003219491.1 spore coat protein CotJB -
  AB0R82_RS03895 (AB0R82_03895) cotJC 748722..749291 (+) 570 WP_003233850.1 spore coat protein CotJC -
  AB0R82_RS03900 (AB0R82_03900) yesJ 749416..749958 (+) 543 WP_029317431.1 GNAT family N-acetyltransferase -
  AB0R82_RS03905 (AB0R82_03905) - 750010..750281 (+) 272 Protein_717 YesK-like family protein -
  AB0R82_RS03910 (AB0R82_03910) yesL 750396..751025 (+) 630 WP_072173406.1 YesL family protein -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 43915.17 Da        Isoelectric Point: 5.7144

>NTDB_id=917552 AB0R82_RS03865 WP_038428548.1 745362..746492(+) (rapC) [Bacillus subtilis strain JM553]
MSQAIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGQTYGNRPTVT
ELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPVVSDDIEKAEFHFKVAEAYYHMKQTHVSMH
HILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALDLAMDIQNDRFIAISLLNIANSYDRSGDDQMAV
EHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDL
LSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDILKGECLYAY

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=917552 AB0R82_RS03865 WP_038428548.1 745362..746492(+) (rapC) [Bacillus subtilis strain JM553]
TTGAGTCAAGCCATACCGTCTTCGCGTGTAGGTGTTAAGATTAATGAATGGTATAAAATGATTCGCCAGTTCAGTGTTCC
GGATGCTGAGATTCTGAAAGCAGAGGTGGAGCAGGACATTCAGCAGATGGAAGAAGACCAGGATTTGCTGATCTATTATT
CTCTGATGTGTTTTCGTCACCAGCTGATGCTTGATTATTTGGAGCCGGGACAAACATACGGGAATCGCCCTACAGTGACA
GAGCTTCTTGAAACGATTGAGACCCCTCAGAAAAAACTCACAGGCCTTTTGAAATATTACTCTTTGTTTTTCCGCGGCAT
GTATGAATTTGATCAAAAAGAATATGTGGAAGCGATCGGATATTATCGCGAGGCGGAGAAAGAACTGCCGGTTGTGTCAG
ATGATATTGAGAAAGCCGAATTCCATTTTAAAGTGGCAGAAGCGTATTATCACATGAAGCAAACCCATGTGTCGATGCAT
CATATTCTTCAAGCCTTGGACATTTATCAAAACCATCCTCTATACAGCATTAGAACGATACAAAGCTTGTTTGTGATCGC
CGGCAACTATGATGATTTCAAACATTATGATAAAGCGCTCCCGCATTTAGAGGCGGCGCTAGATTTGGCAATGGACATTC
AAAATGACAGGTTTATCGCCATTTCTCTATTGAACATTGCAAACAGCTATGACAGATCAGGAGACGATCAGATGGCTGTA
GAACATTTCCAAAAAGCGGCGAAAGTAAGCAGAGAGAAAGTCCCTGATCTGCTTCCGAAAGTCTTGTTTGGGTTAAGCTG
GACATTATGTAAAGCGGGCCAAACACAGAAGGCGTTTCAGTTCATAGAGGAAGGATTAGACCATATCACAGCACGTTCTC
ACAAATTTTATAAAGAATTGTTTCTGTTCTTGCAGGCCGTGTACAAGGAGACTGTTGATGAACGAAAAATTCATGATCTT
TTAAGCTATTTCGAAAAAAAGAACCTGCACGCGTACATTGAAGCATGTGCCCGGAGTGCTGCCGCTGTTTTTGAAAGCAG
CTGTCACTTTGAACAAGCTGCTGCGTTTTATCGGAAAGTGCTAAAAGCCCAAGAAGATATTCTAAAAGGAGAGTGTTTAT
ATGCCTATTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_7)

(222-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

40.426

100

0.404
  rapF Bacillus subtilis subsp. subtilis str. 168

39.788

100

0.399