Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   AB0R82_RS03110 Genome accession   NZ_CP160220
Coordinates   587516..588157 (+) Length   213 a.a.
NCBI ID   WP_003244318.1    Uniprot ID   P96686
Organism   Bacillus subtilis strain JM553     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 582516..593157
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R82_RS03080 (AB0R82_03080) ydfE 583705..584328 (-) 624 WP_019712437.1 flavin reductase family protein -
  AB0R82_RS03085 (AB0R82_03085) ydfF 584418..585098 (+) 681 WP_019712438.1 winged helix-turn-helix domain-containing protein -
  AB0R82_RS03090 (AB0R82_03090) ydfG 585178..585621 (-) 444 WP_014478970.1 carboxymuconolactone decarboxylase family protein -
  AB0R82_RS03095 (AB0R82_03095) - 585707..585886 (-) 180 WP_010886421.1 hypothetical protein -
  AB0R82_RS03100 (AB0R82_03100) - 585883..586032 (-) 150 WP_003234189.1 hypothetical protein -
  AB0R82_RS03105 (AB0R82_03105) ydfH 586300..587523 (+) 1224 WP_032678641.1 two-component system sensor histidine kinase YdfH -
  AB0R82_RS03110 (AB0R82_03110) vraR 587516..588157 (+) 642 WP_003244318.1 two-component system response regulator YdfI Regulator
  AB0R82_RS03115 (AB0R82_03115) pleJ 588273..590447 (+) 2175 WP_019712440.1 MMPL family transporter -
  AB0R82_RS03120 (AB0R82_03120) cesA 590862..591764 (-) 903 WP_038427431.1 carboxylesterase -
  AB0R82_RS03125 (AB0R82_03125) ydfK 591967..592656 (-) 690 WP_033883509.1 DUF554 domain-containing protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23973.92 Da        Isoelectric Point: 5.4183

>NTDB_id=917550 AB0R82_RS03110 WP_003244318.1 587516..588157(+) (vraR) [Bacillus subtilis strain JM553]
MNKVLIVDDHLVVREGLKLLIETNDQYTIIGEAENGKVAVRLADELEPDIILMDLYMPEMSGLEAIKQIKEKHDTPIIIL
TTYNEDHLMIEGIELGAKGYLLKDTSSETLFHTMDAAIRGNVLLQPDILKRLQEIQFERMKKQRNETQLTEKEVIVLKAI
AKGLKSKAIAFDLGVSERTVKSRLTSIYNKLGANSRTEAVTIAMQKGILTIDN

Nucleotide


Download         Length: 642 bp        

>NTDB_id=917550 AB0R82_RS03110 WP_003244318.1 587516..588157(+) (vraR) [Bacillus subtilis strain JM553]
ATGAATAAGGTTTTAATCGTTGATGACCATCTTGTCGTGAGGGAAGGTTTGAAGCTTTTAATTGAAACGAATGATCAATA
CACCATTATAGGAGAGGCGGAAAATGGAAAAGTCGCAGTCCGTCTTGCAGATGAATTAGAACCGGATATCATTCTGATGG
ATTTGTATATGCCGGAGATGAGCGGGTTAGAGGCCATTAAACAAATAAAAGAAAAACACGATACCCCCATCATTATTTTG
ACTACATATAATGAAGATCACTTAATGATCGAAGGGATTGAATTAGGAGCGAAAGGATATCTGTTAAAGGATACGAGTTC
AGAAACCCTTTTTCACACAATGGATGCAGCGATCAGAGGAAATGTGCTATTGCAGCCTGATATCCTCAAACGTCTGCAAG
AAATCCAATTTGAGCGGATGAAAAAGCAGCGCAATGAGACGCAGCTGACAGAAAAGGAAGTCATTGTTCTAAAAGCAATT
GCTAAAGGTCTTAAAAGCAAAGCGATTGCCTTTGATTTGGGCGTCTCTGAGCGAACAGTAAAGTCAAGATTAACGTCCAT
TTACAATAAATTAGGCGCGAATTCAAGAACTGAGGCAGTAACGATTGCCATGCAAAAAGGTATTCTGACAATAGACAACT
AA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-112)

Bacterial regulatory proteins, luxR family (GerE)

(148-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P96686

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

36.493

99.061

0.362