Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   AB0R82_RS02405 Genome accession   NZ_CP160220
Coordinates   470445..470879 (+) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis strain JM553     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 465445..475879
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R82_RS02375 (AB0R82_02375) ydaD 466092..466952 (+) 861 WP_003246648.1 SDR family oxidoreductase -
  AB0R82_RS02380 (AB0R82_02380) lyxE 466968..467471 (+) 504 WP_003234400.1 D-lyxose ketol-isomerase -
  AB0R82_RS02385 (AB0R82_02385) ydaF 467559..468110 (+) 552 WP_015252797.1 GNAT family protein -
  AB0R82_RS02390 (AB0R82_02390) ydaG 468188..468610 (+) 423 WP_003234396.1 pyridoxamine 5'-phosphate oxidase family protein -
  AB0R82_RS02395 (AB0R82_02395) amj 469116..469925 (+) 810 WP_015715258.1 lipid II flippase Amj -
  AB0R82_RS02400 (AB0R82_02400) ydzA 469970..470260 (-) 291 WP_014475846.1 DUF3817 domain-containing protein -
  AB0R82_RS02405 (AB0R82_02405) lrpC 470445..470879 (+) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  AB0R82_RS02410 (AB0R82_02410) topB 470944..473127 (+) 2184 WP_144527494.1 DNA topoisomerase III -
  AB0R82_RS02415 (AB0R82_02415) ephJ 473330..474418 (+) 1089 WP_046664274.1 lipoprotein YdaJ -
  AB0R82_RS02420 (AB0R82_02420) epsK 474399..475250 (+) 852 WP_046664273.1 cyclic-di-GMP receptor EpsK -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=917549 AB0R82_RS02405 WP_003246585.1 470445..470879(+) (lrpC) [Bacillus subtilis strain JM553]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=917549 AB0R82_RS02405 WP_003246585.1 470445..470879(+) (lrpC) [Bacillus subtilis strain JM553]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTAACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATCAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTGGGGCTTCCCGTTTCCTGTATTGTGGAAGCAACCGTTAAAAACGCGGATTACGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTATCGGATTGCGGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCATACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1