Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   U9I39_RS01170 Genome accession   NZ_CP141589
Coordinates   242979..244778 (-) Length   599 a.a.
NCBI ID   WP_346222662.1    Uniprot ID   -
Organism   Lacticaseibacillus rhamnosus strain S22825     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 237979..249778
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U9I39_RS01145 (U9I39_01145) - 239121..239465 (+) 345 WP_005694534.1 hypothetical protein -
  U9I39_RS01150 (U9I39_01150) - 239630..240349 (+) 720 WP_005685357.1 ATP-binding cassette domain-containing protein -
  U9I39_RS01155 (U9I39_01155) - 240346..241143 (+) 798 WP_005685358.1 metal ABC transporter permease -
  U9I39_RS01160 (U9I39_01160) - 241256..242104 (-) 849 WP_005690009.1 metallophosphoesterase family protein -
  U9I39_RS01165 (U9I39_01165) - 242101..242982 (-) 882 WP_033572163.1 NAD(P)-dependent oxidoreductase -
  U9I39_RS01170 (U9I39_01170) pepF 242979..244778 (-) 1800 WP_346222662.1 oligoendopeptidase F Regulator
  U9I39_RS01175 (U9I39_01175) - 244907..246001 (+) 1095 WP_033572165.1 LCP family protein -
  U9I39_RS01180 (U9I39_01180) brnQ 246110..247489 (-) 1380 WP_346222663.1 branched-chain amino acid transport system II carrier protein -
  U9I39_RS01185 (U9I39_01185) - 248143..248832 (-) 690 WP_032960644.1 hydrolase -

Sequence

Protein


Download         Length: 599 a.a.        Molecular weight: 67154.10 Da        Isoelectric Point: 5.4357

>NTDB_id=917542 U9I39_RS01170 WP_346222662.1 242979..244778(-) (pepF) [Lacticaseibacillus rhamnosus strain S22825]
MQHLPAREDVPTQLTWDLTTIYPDDSAWETDFKAVRAQAKAAVALKGTLGNSADALVTGIKAVLAVFRRFERVYVYSSLK
SDQDTGNATYQAMNAKAESLGAELASQLAFLDPEILAIPSDKLTAWRDTESLKPFGHFIDAITVNREHVLTTAAEALIAS
AGDALNASHATFNVLNNSDLQFGFVENEDGETVQLSNGLYGQLIRSTNRKLRKEAFEALLRAYESLKNTFAQTLSGQVKA
HNFNATAHHCKNARAAAMASNHIPESVYTTLIDQVNTHLPLLHRYVALRKKVLAVDQLHMYDIYTPLTGQPPLTYTLEQA
KAEALKALAPLGDDYLEHVREIFDNRYIDVVENKGKRSGAYSGGAYDTNPFILLNWHDAVDELYTLVHETGHSVHSWYTR
HNQPYVYGDYPIFVAEIASTTNENLLTDYFLTHSDDPKVRAYILNYYLDGFKGTVFRQTQFAEFEHWIHQQDQQGEPLTA
TSMSQYYADLNARYYGPEVARDPEVAFEWARIPHFYYNYYVYQYATGFAAASTLAAGISSGEPDAAARYLDYLKSGSSKY
AIDTMKTAGVDMTKPDYLEAAFSVFEQRLTELEKILQKG

Nucleotide


Download         Length: 1800 bp        

>NTDB_id=917542 U9I39_RS01170 WP_346222662.1 242979..244778(-) (pepF) [Lacticaseibacillus rhamnosus strain S22825]
ATGCAACATTTACCAGCACGAGAGGATGTCCCAACGCAATTGACCTGGGACCTGACAACGATTTATCCAGATGATTCAGC
TTGGGAAACCGACTTTAAAGCTGTCCGTGCCCAAGCCAAAGCGGCCGTCGCACTGAAAGGAACGTTAGGCAACTCGGCAG
ACGCCCTTGTTACCGGCATTAAAGCTGTACTTGCGGTTTTTCGCCGTTTCGAAAGGGTTTATGTCTATTCAAGCTTAAAA
AGCGATCAAGATACCGGTAACGCCACTTATCAGGCGATGAATGCCAAAGCTGAAAGCCTGGGTGCTGAATTAGCCAGTCA
GTTAGCGTTTTTGGATCCGGAAATTCTGGCGATCCCAAGCGACAAATTAACGGCATGGCGTGACACTGAAAGCTTGAAGC
CGTTCGGACATTTTATTGATGCCATCACGGTAAATCGAGAACACGTCTTGACAACCGCTGCCGAGGCTTTGATTGCAAGT
GCGGGCGATGCGTTAAATGCCAGTCACGCGACCTTCAATGTATTAAACAACTCTGATCTGCAATTCGGGTTTGTTGAAAA
TGAAGATGGCGAAACCGTCCAGCTTAGTAACGGTTTGTACGGTCAATTGATTCGCTCGACGAACCGTAAATTACGCAAGG
AGGCTTTCGAAGCCCTTCTGCGTGCTTACGAAAGTTTGAAAAATACGTTTGCGCAAACGTTAAGTGGTCAGGTAAAAGCC
CATAATTTCAACGCAACGGCGCATCATTGCAAAAATGCGCGTGCTGCCGCTATGGCAAGTAATCACATTCCGGAAAGTGT
GTACACGACGCTTATCGACCAGGTTAACACCCACCTACCGCTTTTACATCGTTATGTCGCCTTGCGCAAAAAGGTGTTGG
CAGTCGATCAGTTACACATGTATGACATTTACACACCACTGACTGGCCAGCCGCCGTTGACTTATACGCTTGAACAAGCC
AAAGCAGAGGCCTTAAAAGCTTTAGCCCCACTAGGCGATGATTATCTTGAGCATGTTCGCGAAATTTTTGACAATCGCTA
TATTGATGTTGTCGAAAATAAAGGCAAACGTTCAGGCGCCTATTCCGGTGGCGCTTATGATACCAATCCGTTCATCTTAT
TGAACTGGCACGATGCTGTTGATGAACTCTATACGTTGGTTCACGAAACCGGCCACAGCGTCCACAGTTGGTACACGCGT
CACAATCAGCCGTATGTCTATGGTGATTATCCGATCTTTGTTGCCGAAATTGCTTCAACAACCAACGAAAACCTGTTAAC
TGATTATTTCCTGACACATTCGGATGATCCCAAAGTACGAGCCTACATTTTGAATTACTATCTCGATGGTTTTAAGGGAA
CTGTTTTCCGTCAGACACAATTTGCCGAGTTCGAGCACTGGATTCACCAACAGGATCAGCAAGGCGAACCGTTAACGGCC
ACCAGCATGTCACAATATTACGCCGATCTCAATGCCCGGTATTATGGACCGGAAGTGGCACGCGATCCGGAAGTTGCGTT
TGAATGGGCCCGCATTCCGCACTTCTACTACAATTACTATGTTTACCAGTATGCAACCGGCTTTGCTGCTGCCTCAACCT
TAGCAGCGGGCATCAGTAGCGGTGAACCTGACGCGGCAGCCCGTTACTTAGACTATTTGAAGTCAGGGAGTTCTAAGTAT
GCCATTGACACCATGAAAACAGCTGGCGTTGATATGACCAAACCCGATTATCTTGAAGCCGCCTTTTCAGTATTCGAACA
GCGCTTGACGGAATTGGAAAAAATCTTGCAGAAAGGATGA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(114-182)

Peptidase family M3 (Peptidase_M3)

(203-582)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

52.605

99.332

0.523