Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   U3O62_RS14485 Genome accession   NZ_CP141581
Coordinates   2987840..2988469 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain ECO-104     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2982840..2993469
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U3O62_RS14470 (U3O62_14470) helD 2983082..2985136 (-) 2055 WP_001295354.1 DNA helicase IV -
  U3O62_RS14475 (U3O62_14475) yccF 2985259..2985705 (+) 447 WP_001261235.1 YccF domain-containing protein -
  U3O62_RS14480 (U3O62_14480) yccS 2985715..2987877 (+) 2163 WP_000875058.1 YccS family putative transporter -
  U3O62_RS14485 (U3O62_14485) sxy/tfoX 2987840..2988469 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  U3O62_RS14490 (U3O62_14490) sulA 2988688..2989197 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  U3O62_RS14495 (U3O62_14495) ompA 2989554..2990594 (+) 1041 WP_000750416.1 porin OmpA -
  U3O62_RS14500 (U3O62_14500) matP 2990670..2991122 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  U3O62_RS14505 (U3O62_14505) ycbZ 2991308..2993068 (+) 1761 WP_000152888.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=917485 U3O62_RS14485 WP_000839153.1 2987840..2988469(-) (sxy/tfoX) [Escherichia coli strain ECO-104]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=917485 U3O62_RS14485 WP_000839153.1 2987840..2988469(-) (sxy/tfoX) [Escherichia coli strain ECO-104]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1