Detailed information NTG0917467

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ABZM40_RS05330
• Genome accession: NZ_CP160188
• Coordinates: 1088084..1089076 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain A2
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1083084..1094076

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABZM40_RS05300 (ABZM40_05295)	ispD	1083145..1083855 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
ABZM40_RS05305 (ABZM40_05300)	ispF	1083855..1084334 (+)	480	WP_001374730.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ABZM40_RS05310 (ABZM40_05305)	truD	1084331..1085380 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
ABZM40_RS05315 (ABZM40_05310)	surE	1085361..1086122 (+)	762	WP_001374723.1	5'/3'-nucleotidase SurE	-
ABZM40_RS05320 (ABZM40_05315)	pcm	1086116..1086742 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
ABZM40_RS05325 (ABZM40_05320)	nlpD	1086927..1088021 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
ABZM40_RS05330 (ABZM40_05325)	rpoS	1088084..1089076 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
ABZM40_RS05335 (ABZM40_05330)	ygbN	1089170..1090534 (-)	1365	WP_000104456.1	GntP family transporter	-
ABZM40_RS05340 (ABZM40_05335)	ygbM	1090623..1091399 (-)	777	WP_001136918.1	HPr family phosphocarrier protein	-
ABZM40_RS05345 (ABZM40_05340)	ygbL	1091404..1092042 (-)	639	WP_001278994.1	aldolase	-
ABZM40_RS05350 (ABZM40_05345)	otnK	1092039..1093301 (-)	1263	WP_000590392.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=917467 ABZM40_RS05330 WP_000081550.1 1088084..1089076(+) (rpoS) [Escherichia coli strain A2]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=917467 ABZM40_RS05330 WP_000081550.1 1088084..1089076(+) (rpoS) [Escherichia coli strain A2]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715