Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   OCV52_RS13050 Genome accession   NZ_AP025465
Coordinates   2868484..2869002 (-) Length   172 a.a.
NCBI ID   WP_061032464.1    Uniprot ID   A0A7V7NT91
Organism   Vibrio chagasii strain LMG 21353     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2863484..2874002
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV52_RS13025 rimM 2863542..2864096 (-) 555 WP_061032467.1 ribosome maturation factor RimM -
  OCV52_RS13030 rpsP 2864121..2864369 (-) 249 WP_004410028.1 30S ribosomal protein S16 -
  OCV52_RS13035 ffh 2864589..2865980 (-) 1392 WP_061032466.1 signal recognition particle protein -
  OCV52_RS13040 - 2866181..2866975 (+) 795 WP_004738143.1 inner membrane protein YpjD -
  OCV52_RS13045 - 2867103..2868374 (+) 1272 WP_061032465.1 HlyC/CorC family transporter -
  OCV52_RS13050 luxS 2868484..2869002 (-) 519 WP_061032464.1 S-ribosylhomocysteine lyase Regulator
  OCV52_RS13055 - 2869027..2869677 (-) 651 WP_137408066.1 hypothetical protein -
  OCV52_RS13060 gshA 2869688..2871256 (-) 1569 WP_137408065.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18864.63 Da        Isoelectric Point: 4.5912

>NTDB_id=91743 OCV52_RS13050 WP_061032464.1 2868484..2869002(-) (luxS) [Vibrio chagasii strain LMG 21353]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRAQLNGADVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWLAAMQDVLKVESQNKIPELNEYQCGTAAMHSLDEAKEIANAIIAAGISVNKNDELA
LPESMLKELKVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=91743 OCV52_RS13050 WP_061032464.1 2868484..2869002(-) (luxS) [Vibrio chagasii strain LMG 21353]
ATGCCTTTATTAGATAGTTTTACTGTAGATCACACTCGTATGAACGCACCAGCAGTTCGTGTTGCGAAAACAATGCAAAC
TCCAAAAGGGGATACCATTACGGTATTTGACCTGCGTTTTACGGCACCAAACAAAGATATCCTATCTGAGAAAGGTATCC
ATACTCTAGAGCACCTATACGCTGGCTTCATGCGTGCTCAACTGAACGGTGCAGACGTAGAGATTATCGATATTTCACCT
ATGGGCTGTCGTACAGGTTTCTACATGAGCCTGATTGGTACACCTTCAGAGCAGCAAGTTGCTGATGCTTGGTTAGCGGC
AATGCAAGACGTGCTGAAAGTTGAGAGCCAGAATAAGATCCCTGAGCTGAACGAATACCAGTGTGGTACAGCAGCAATGC
ACTCTTTAGACGAAGCGAAAGAGATCGCGAATGCCATCATCGCTGCTGGTATCTCAGTAAATAAGAACGACGAACTAGCA
CTGCCAGAGTCAATGCTTAAAGAGCTTAAAGTCGATTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7V7NT91

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

89.474

99.419

0.89

Multiple sequence alignment