Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   OCV52_RS10670 Genome accession   NZ_AP025465
Coordinates   2347075..2348463 (-) Length   462 a.a.
NCBI ID   WP_032553998.1    Uniprot ID   -
Organism   Vibrio chagasii strain LMG 21353     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2342075..2353463
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV52_RS10635 moaE 2342631..2343086 (-) 456 WP_137408082.1 molybdopterin synthase catalytic subunit MoaE -
  OCV52_RS10640 moaD 2343089..2343334 (-) 246 WP_004737346.1 molybdopterin synthase sulfur carrier subunit -
  OCV52_RS10645 moaC 2343331..2343810 (-) 480 WP_137408081.1 cyclic pyranopterin monophosphate synthase MoaC -
  OCV52_RS10650 moaB 2343823..2344335 (-) 513 WP_004737344.1 molybdenum cofactor biosynthesis protein B -
  OCV52_RS10655 moaA 2344415..2345404 (-) 990 WP_004737343.1 GTP 3',8-cyclase MoaA -
  OCV52_RS10660 - 2345740..2346627 (+) 888 WP_102426541.1 YvcK family protein -
  OCV52_RS10665 luxU 2346707..2347051 (-) 345 WP_061033803.1 quorum-sensing phosphorelay protein LuxU -
  OCV52_RS10670 luxO 2347075..2348463 (-) 1389 WP_032553998.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  OCV52_RS10675 uvrB 2348753..2350783 (-) 2031 WP_137408080.1 excinuclease ABC subunit UvrB -
  OCV52_RS10685 - 2351735..2352175 (-) 441 WP_137408079.1 hypothetical protein -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 51705.26 Da        Isoelectric Point: 6.4047

>NTDB_id=91737 OCV52_RS10670 WP_032553998.1 2347075..2348463(-) (luxO) [Vibrio chagasii strain LMG 21353]
MQSKTLDNKSKYLLMVEDTASVAALYRSYLTPLEIDINIVGTGRDAIESLNHRIPDLILLDLRLPDMTGMDVLFAVKQKY
PEVPVIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRITVNNAIRKATKLKNSSEHPGNQNYQGFIGSSQTMQQVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADG
GTLFLDELCEMDLELQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVIEIAYSLLGYMSVEEGKAFVRFAQEVLDRFNQYEWPGNVRQLQNVLRNVVVLNNGKEITLNMLPPPLNQPIENSL
RLKEKQSEDITVKDIFPLWITEKTAIEQAIKACDGNIPRAAGFLDVSPSTIYRKLQAWNAKQ

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=91737 OCV52_RS10670 WP_032553998.1 2347075..2348463(-) (luxO) [Vibrio chagasii strain LMG 21353]
ATGCAATCAAAAACGCTAGATAACAAATCAAAGTATTTGTTGATGGTAGAGGATACCGCCTCGGTAGCAGCTTTGTACCG
CTCGTATCTTACACCGCTGGAAATTGATATCAACATTGTCGGCACCGGCCGCGATGCAATTGAGAGTTTGAATCATCGAA
TCCCTGACCTAATTTTATTAGATTTACGTCTACCTGATATGACGGGTATGGACGTGCTATTTGCGGTTAAACAAAAGTAC
CCTGAGGTGCCTGTTATCTTCATGACAGCTCACGGTTCGATTGATACTGCAGTTGAAGCTATGCGTCATGGTTCTCAAGA
CTTCCTTATCAAACCGTGTGAAGCCGACCGTCTACGTATTACGGTCAACAACGCAATACGCAAAGCGACGAAATTAAAGA
ATAGTTCAGAGCACCCTGGAAATCAGAACTATCAAGGTTTCATCGGTAGTAGCCAAACTATGCAGCAGGTGTATCGAACT
ATTGACTCTGCCGCATCAAGTAAAGCGAGTATTTTCATAACCGGTGAAAGTGGTACCGGTAAAGAGGTGTGTGCAGAAGC
GATTCATGCTGCGAGTAAGCGTGGCGATAAACCGTTTATCGCCATTAACTGTGCGGCGATTCCCAAGGACTTGATTGAAA
GTGAACTGTTTGGTCACGTGAAAGGGGCATTTACAGGGGCGGCAACAGACCGTCAAGGCGCGGCTGAGCTAGCTGATGGA
GGCACCTTGTTCCTTGACGAGCTTTGTGAGATGGACCTTGAACTGCAAACCAAGCTTCTGCGTTTTATTCAGACAGGCAC
CTTCCAAAAAGTAGGTTCGTCGAAGATGAAGAGTGTCGACGTTCGTTTTGTTTGTGCGACCAACCGCGATCCTTGGAAAG
AAGTTCAAGAAGGGCGCTTTAGAGAAGATTTATACTATCGTTTGTATGTAATTCCTCTGCACTTGCCGCCATTGCGTGAG
CGTGGTGAAGATGTAATCGAGATTGCATACTCACTGCTAGGTTACATGTCAGTGGAAGAGGGTAAAGCGTTTGTGCGTTT
TGCTCAGGAAGTGCTGGATCGTTTTAATCAATATGAGTGGCCGGGTAACGTTCGTCAGCTGCAAAACGTATTGCGAAATG
TTGTGGTATTGAACAATGGTAAAGAGATTACGCTCAACATGTTGCCGCCACCACTAAACCAGCCAATTGAAAACAGTCTA
CGTTTGAAAGAGAAGCAGAGTGAAGACATCACAGTTAAGGATATTTTCCCGCTGTGGATCACTGAAAAAACAGCCATCGA
GCAGGCCATCAAAGCGTGTGATGGCAACATTCCAAGAGCAGCTGGTTTCTTGGATGTAAGTCCATCGACCATCTACCGTA
AATTGCAAGCGTGGAATGCAAAGCAGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(14-122)

Bacterial regulatory protein, Fis family (HTH_8)

(418-458)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

86.161

96.97

0.836

Multiple sequence alignment