Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   OCV52_RS08005 Genome accession   NZ_AP025465
Coordinates   1695525..1697033 (-) Length   502 a.a.
NCBI ID   WP_137406410.1    Uniprot ID   A0A7V7NXE3
Organism   Vibrio chagasii strain LMG 21353     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1690525..1702033
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV52_RS07985 - 1690853..1691971 (-) 1119 WP_137406406.1 glycosyltransferase -
  OCV52_RS07990 - 1691964..1692749 (-) 786 WP_137406407.1 DapH/DapD/GlmU-related protein -
  OCV52_RS07995 - 1692843..1694216 (-) 1374 WP_137406408.1 O-antigen ligase family protein -
  OCV52_RS08000 - 1694414..1695544 (-) 1131 WP_137406409.1 glycosyltransferase family 4 protein -
  OCV52_RS08005 luxO 1695525..1697033 (-) 1509 WP_137406410.1 sigma-54 dependent transcriptional regulator Regulator
  OCV52_RS08010 - 1697239..1697643 (-) 405 WP_137406411.1 Hpt domain-containing protein -
  OCV52_RS08015 - 1698016..1699248 (-) 1233 WP_137406412.1 glycine betaine/L-proline ABC transporter ATP-binding protein -
  OCV52_RS08020 - 1699241..1700140 (-) 900 WP_137406413.1 proline/glycine betaine ABC transporter permease -
  OCV52_RS08025 - 1700296..1701288 (-) 993 WP_061034074.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 502 a.a.        Molecular weight: 56074.02 Da        Isoelectric Point: 5.5314

>NTDB_id=91733 OCV52_RS08005 WP_137406410.1 1695525..1697033(-) (luxO) [Vibrio chagasii strain LMG 21353]
MRPKVLLVEDSTSLAVLYKQYVKDEPYDIFHVETGAEAKTFIERHVPQLVILDLKLPDMPGEEVLDWISDNDIPTAAIIA
TAHGSVNIAVDLIQRGAEDFLEKPIQADRLKTSVNLHLRRAKLENLVDNIQSKFDRDRFHNFIGSCLPMQAVYKIIDSVA
PTTASVFINGESGTGKEVCAEAIHQESQRGDKPFVAINCGAIPRDLMESEIFGHVKGAFTGATTDRKGAAMQAHGGTLFL
DELCEMESEMQKKLLRFLQTGTFTPLGGNREIKVDVRIICATNRDPLVEVEEGRFREDLYYRVHVVPIEMPPLRERGSDI
VTLANHFLKLYAKQDKKKFKSIDKETQGLLKRYPWPGNVRQLQNIIRNIVVLNNETSVTKEMLPAPINKADATTSKSVTP
IRSAVVEAVSPVVQEGKLPPVTPEELERSSVSQDTNDPMTPAFTTSDGAIRPMWQIEREAIQHAINHCDGNVLNAAVLLE
LSPSTVYRKKQAWESEDECNQA

Nucleotide


Download         Length: 1509 bp        

>NTDB_id=91733 OCV52_RS08005 WP_137406410.1 1695525..1697033(-) (luxO) [Vibrio chagasii strain LMG 21353]
ATGCGCCCTAAGGTATTGTTAGTTGAAGACTCCACCTCCCTCGCCGTACTTTACAAGCAGTACGTAAAAGACGAGCCATA
CGACATATTTCATGTCGAAACTGGAGCTGAAGCAAAAACATTTATAGAGAGACACGTCCCACAACTGGTCATCCTCGATC
TAAAACTGCCTGATATGCCAGGTGAAGAGGTATTAGATTGGATCAGTGATAACGACATCCCAACCGCTGCAATCATCGCG
ACAGCCCATGGTTCAGTGAACATTGCCGTTGACCTAATTCAGCGCGGTGCGGAAGACTTCTTAGAAAAGCCAATTCAAGC
CGACCGCCTAAAAACATCGGTTAACCTACATCTGCGCAGAGCCAAACTCGAAAATCTAGTCGACAATATTCAAAGCAAAT
TCGATCGTGACCGTTTCCATAACTTCATCGGTTCTTGTTTACCGATGCAAGCCGTTTATAAAATCATCGACTCAGTTGCT
CCGACAACCGCAAGTGTGTTCATCAATGGCGAGAGCGGGACAGGTAAAGAAGTATGCGCAGAGGCTATTCACCAAGAGAG
TCAGCGTGGTGATAAACCATTCGTTGCCATCAACTGTGGTGCTATTCCCCGCGATTTAATGGAAAGCGAAATCTTCGGTC
ATGTCAAAGGCGCATTTACCGGTGCAACAACCGATCGTAAAGGTGCTGCAATGCAAGCACACGGTGGCACACTGTTTCTG
GATGAACTTTGTGAAATGGAATCGGAAATGCAGAAAAAGCTCCTTCGATTCCTACAAACCGGGACTTTTACCCCGTTAGG
TGGCAACCGAGAAATCAAAGTAGATGTCAGAATCATCTGTGCGACTAACCGTGACCCTCTCGTCGAAGTAGAAGAAGGTC
GATTCCGTGAAGACCTTTACTATCGTGTACATGTGGTGCCTATTGAGATGCCACCGCTGAGAGAAAGAGGAAGTGACATT
GTCACTCTAGCTAACCACTTTTTGAAACTTTACGCCAAACAAGACAAGAAGAAATTCAAGTCTATCGATAAAGAGACACA
AGGTTTACTTAAGCGCTATCCATGGCCGGGCAATGTTCGTCAGCTACAAAACATCATTCGCAACATCGTAGTGTTAAACA
ATGAAACCAGTGTAACCAAAGAGATGTTACCTGCTCCGATCAATAAAGCAGACGCTACAACCTCAAAAAGCGTTACGCCA
ATACGTAGCGCTGTTGTCGAAGCTGTGTCGCCAGTTGTTCAAGAAGGTAAGCTGCCTCCAGTCACACCAGAAGAGCTTGA
GCGTTCATCTGTCTCTCAAGACACAAATGATCCAATGACACCGGCATTTACCACTAGTGACGGTGCGATACGTCCAATGT
GGCAGATAGAACGCGAAGCCATTCAACATGCGATCAATCATTGTGATGGAAATGTGTTAAACGCTGCCGTTTTATTGGAG
TTGAGTCCTTCCACTGTTTACCGTAAGAAACAGGCTTGGGAGTCTGAAGATGAGTGTAACCAAGCCTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-114)

Bacterial regulatory protein, Fis family (HTH_8)

(453-489)

Sigma-54 interaction domain (Sigma54_activat)

(143-309)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7V7NXE3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

49.795

97.211

0.484

Multiple sequence alignment