Detailed information NTG0091732

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: OCV52_RS06880
• Genome accession: NZ_AP025465
• Coordinates: 1492933..1494357 (-)
• Length: 474 a.a.
• NCBI ID: WP_137407722.1
• Uniprot ID: A0A7V7NTS6
• Organism: Vibrio chagasii strain LMG 21353
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1487933..1499357

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OCV52_RS06855	-	1488604..1489257 (+)	654	WP_137407719.1	thiopurine S-methyltransferase	-
OCV52_RS06860	purT	1489350..1490525 (-)	1176	WP_137407720.1	formate-dependent phosphoribosylglycinamide formyltransferase	-
OCV52_RS06865	cdd	1490693..1491580 (-)	888	WP_008217477.1	cytidine deaminase	-
OCV52_RS06870	-	1491857..1492534 (-)	678	WP_102426041.1	LrgB family protein	-
OCV52_RS06875	-	1492537..1492908 (-)	372	WP_137407721.1	CidA/LrgA family protein	-
OCV52_RS06880	sbcB	1492933..1494357 (-)	1425	WP_137407722.1	exodeoxyribonuclease I	Machinery gene
OCV52_RS06885	-	1495322..1495756 (+)	435	WP_008217484.1	DUF4402 domain-containing protein	-
OCV52_RS06890	-	1495809..1496258 (+)	450	WP_240700679.1	DUF4402 domain-containing protein	-
OCV52_RS06895	-	1496255..1496965 (+)	711	WP_137407723.1	molecular chaperone	-

Sequence

Protein

• Length: 474 a.a.
• Molecular weight: 54816.11 Da
• Isoelectric Point: 4.7746

>NTDB_id=91732 OCV52_RS06880 WP_137407722.1 1492933..1494357(-) (sbcB) [Vibrio chagasii strain LMG 21353]
MSSDNQPTYFFFDYETWGVSPAKDRPSQFAGVRTDQDFNIIGEPLVIYCQPPADYLPAPEAALITRITPQKAMSQGLPEP
EFIAKIHAELAKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRAVHALRPDGIVWPENEEGFP
SFKLEHLSVANGIEHENAHDAMADVIATIELAKKLKTAQPKMFDYLYNMRHKRKLNELVDIVNMTPLMHVSGMFGRDCNY
TSWIVPMAWHPTNQNAVIVVDLAKDPSPLLELDTDELRERLYTKRSDLNEDELPVPIKLVQLNKCPILAPAKTLTAENAE
TIGIDRQQCLKNLAILREHPEIREKLIGLYSQEREYEKSDDVDTQIYDGFFSPADKTAMNIIRETDPNNLAALDITFSDE
RIKPLLFRYRARNFPWTLDESEQLKWANHCREFYESRLEEYMLNLENLAHEHESDEKKMAILKAVYQYVEKLAS

Nucleotide

• Length: 1425 bp

>NTDB_id=91732 OCV52_RS06880 WP_137407722.1 1492933..1494357(-) (sbcB) [Vibrio chagasii strain LMG 21353]
ATGAGTTCAGATAATCAGCCAACCTACTTCTTTTTCGATTACGAAACATGGGGCGTGAGCCCAGCAAAAGATCGTCCAAG
TCAGTTTGCCGGCGTTCGTACCGACCAAGATTTCAATATTATTGGTGAGCCATTGGTCATCTACTGCCAACCTCCTGCTG
ATTATCTACCTGCACCTGAAGCCGCACTGATCACTCGCATCACTCCACAAAAAGCCATGTCTCAAGGCCTACCGGAACCT
GAGTTCATCGCCAAGATACATGCTGAGCTTGCAAAACCGAACACCACAAGCCTTGGCTACAACAGTATTCGATTCGATGA
CGAAGTAACGCGATACACCTGTTACCGTAACTTCATTGACCCATATGCATGGAGCTGGCAAAACGGTAACTCTCGTTGGG
ATCTATTAGACGTGATGCGTGCCGTACACGCTCTGCGCCCTGACGGTATTGTGTGGCCAGAAAACGAAGAAGGTTTCCCA
AGCTTCAAACTGGAACATCTATCTGTGGCAAACGGCATAGAACATGAAAACGCGCACGATGCGATGGCGGATGTTATCGC
GACAATTGAACTCGCGAAAAAGCTGAAAACCGCACAACCTAAGATGTTTGATTATCTCTACAACATGCGTCACAAGCGCA
AGTTGAACGAATTAGTCGACATCGTAAACATGACACCTTTGATGCATGTGTCAGGCATGTTTGGTCGTGACTGCAATTAC
ACAAGCTGGATTGTTCCTATGGCGTGGCATCCTACCAATCAAAATGCGGTGATTGTTGTCGACCTAGCAAAAGACCCAAG
CCCGCTATTGGAACTTGATACTGATGAACTCAGAGAAAGACTTTACACCAAGCGCAGCGACCTAAATGAAGACGAACTAC
CAGTGCCAATTAAGCTGGTTCAACTCAACAAGTGCCCTATTCTAGCGCCAGCAAAAACGTTAACCGCTGAAAATGCAGAA
ACCATTGGTATTGATCGTCAGCAGTGTTTGAAGAACCTCGCGATCCTGCGCGAGCACCCAGAAATTCGTGAAAAATTGAT
TGGCTTATATTCACAGGAACGTGAGTACGAAAAGAGCGACGATGTAGATACACAGATTTACGATGGCTTCTTCTCACCGG
CAGATAAAACCGCGATGAACATCATTCGTGAGACTGACCCAAATAACTTAGCAGCATTAGACATCACCTTCAGTGACGAA
CGTATTAAGCCTTTGTTGTTCCGTTACCGCGCACGTAACTTCCCATGGACGCTAGATGAATCCGAGCAACTTAAGTGGGC
AAACCATTGTCGTGAGTTTTACGAAAGCCGCTTAGAAGAGTACATGCTCAACCTAGAGAACCTCGCACACGAACATGAAA
GTGACGAGAAGAAAATGGCTATCTTGAAAGCGGTGTATCAATACGTAGAAAAGCTAGCTAGTTAA

Domains

Predicted by InterproScan.

• Exonuclease C-terminal (Exonuc_X-T_C) (210-470)

• Exonuclease (RNase_T) (11-191)

3D structure

• AlphaFold DB: A0A7V7NTS6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	76.744	99.789	0.766