Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   OCV52_RS06780 Genome accession   NZ_AP025465
Coordinates   1473988..1475169 (-) Length   393 a.a.
NCBI ID   WP_137409070.1    Uniprot ID   -
Organism   Vibrio chagasii strain LMG 21353     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1468988..1480169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV52_RS06770 - 1470693..1471556 (+) 864 WP_102426347.1 GyrI-like domain-containing protein -
  OCV52_RS06775 - 1471788..1473835 (+) 2048 Protein_1282 response regulator -
  OCV52_RS06780 cqsA 1473988..1475169 (-) 1182 WP_137409070.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  OCV52_RS06785 - 1475414..1476802 (-) 1389 WP_137409073.1 PLP-dependent aminotransferase family protein -
  OCV52_RS06790 - 1476907..1477821 (+) 915 WP_137409069.1 EamA family transporter -
  OCV52_RS06795 - 1478104..1478976 (+) 873 WP_137409068.1 aspartoacylase -
  OCV52_RS06800 - 1479069..1480079 (-) 1011 WP_137409067.1 GTP-binding protein -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43928.85 Da        Isoelectric Point: 6.1087

>NTDB_id=91731 OCV52_RS06780 WP_137409070.1 1473988..1475169(-) (cqsA) [Vibrio chagasii strain LMG 21353]
MSDKTKNKPLPSFIEERLNHYIEDLITQNESQTHLVLGKRPRRNSVVMQSNDYLALSHNKQIQQAHQQAIAEHDDNIVMS
AIFLQDEDSKPAFENELANYVGMESCLLSQSGWAANIGLLQTICPPQTPVYIDFFAHMSLWEGIRSAGASAHPFMHNNMN
HLRKQLERYGSGVIIVDSVYSTIGTIAPLRDIYEMAQEFDCALVVDESHSLGTHGTKGAGLVEALGLTNQVDFITVSLAK
TFAYRAGAILGPKQLSETLPFVAYPAIFSSTVLPQEVARLEKTLAVIKSSDDKREVLFERAKSLTTGLKQIGFNIRSESQ
IIALECGSERNTERVRDFLEERDVFGAVFCRPATGKNKNIIRFSVNADITPRDIDHVLTVCHQAYHHPELEFV

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=91731 OCV52_RS06780 WP_137409070.1 1473988..1475169(-) (cqsA) [Vibrio chagasii strain LMG 21353]
ATGAGTGATAAAACCAAAAATAAACCACTACCTTCCTTTATTGAAGAACGCTTAAACCATTACATTGAAGATCTCATTAC
CCAGAACGAAAGCCAAACACACTTAGTTCTGGGTAAACGTCCTAGGCGCAATTCAGTTGTGATGCAAAGCAATGATTACC
TCGCGCTATCGCACAACAAACAGATTCAACAAGCCCACCAGCAAGCAATTGCTGAACATGATGACAACATCGTCATGTCG
GCGATTTTCTTACAAGACGAGGATTCAAAACCCGCCTTTGAAAATGAGCTCGCGAACTACGTAGGTATGGAAAGCTGCTT
GCTGTCTCAGTCTGGCTGGGCGGCGAACATCGGCTTACTGCAAACCATCTGCCCACCACAAACTCCTGTGTATATTGATT
TCTTTGCCCACATGTCTTTATGGGAAGGTATTCGATCCGCAGGTGCGAGCGCGCATCCGTTCATGCATAACAATATGAAC
CATCTGCGCAAGCAGCTTGAGCGCTATGGCTCTGGCGTCATTATTGTAGATTCGGTCTATAGCACCATTGGCACGATTGC
CCCACTCCGCGACATCTACGAAATGGCGCAAGAGTTTGATTGTGCACTCGTGGTTGATGAATCGCATTCTCTGGGGACTC
ATGGCACCAAAGGTGCTGGCCTCGTTGAAGCACTTGGGCTCACTAACCAAGTCGATTTCATTACTGTAAGCTTGGCCAAA
ACTTTTGCATACCGTGCTGGCGCGATCTTAGGCCCCAAACAATTGTCTGAGACACTGCCCTTTGTCGCCTATCCTGCGAT
TTTTAGCTCGACCGTATTGCCACAAGAAGTCGCTCGCTTAGAGAAAACCTTGGCGGTCATTAAAAGTTCTGACGATAAGC
GCGAAGTCTTATTCGAACGTGCTAAATCACTCACTACGGGACTTAAACAGATTGGCTTTAACATCCGCAGTGAATCTCAG
ATCATCGCTTTAGAGTGTGGTAGCGAGAGAAATACTGAACGAGTGCGTGATTTCTTAGAGGAGCGAGATGTGTTCGGTGC
GGTATTTTGTCGCCCAGCGACTGGCAAGAACAAAAACATCATCCGCTTCTCTGTGAATGCAGACATAACACCAAGAGATA
TCGATCATGTGCTCACGGTTTGTCACCAGGCATATCATCATCCAGAGCTGGAGTTCGTATAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(46-378)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

56.331

98.473

0.555

Multiple sequence alignment