Detailed information NTG0917246

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AB0U11_RS18590
• Genome accession: NZ_CP160121
• Coordinates: 3763463..3764455 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 729_270514_x_12
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3758463..3769455

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB0U11_RS18570	ygbM	3759094..3759870 (+)	777	WP_001136908.1	HPr family phosphocarrier protein	-
AB0U11_RS18575	ygbN	3759959..3761323 (+)	1365	WP_000104443.1	GntP family transporter	-
AB0U11_RS18580	-	3761466..3762509 (-)	1044	WP_021512441.1	MBL fold metallo-hydrolase	-
AB0U11_RS18585	-	3762734..3763285 (+)	552	WP_001179442.1	flavodoxin family protein	-
AB0U11_RS18590	rpoS	3763463..3764455 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
AB0U11_RS18595	nlpD	3764518..3765612 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
AB0U11_RS18600	pcm	3765797..3766423 (-)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
AB0U11_RS18605	surE	3766417..3767178 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
AB0U11_RS18610	truD	3767159..3768208 (-)	1050	WP_000568928.1	tRNA pseudouridine(13) synthase TruD	-
AB0U11_RS18615	ispF	3768205..3768684 (-)	480	WP_001219247.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
AB0U11_RS18620	ispD	3768684..3769394 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=917246 AB0U11_RS18590 WP_000081550.1 3763463..3764455(-) (rpoS) [Escherichia coli strain 729_270514_x_12]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=917246 AB0U11_RS18590 WP_000081550.1 3763463..3764455(-) (rpoS) [Escherichia coli strain 729_270514_x_12]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715