Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AB0U14_RS07835 Genome accession   NZ_CP160112
Coordinates   1662231..1662860 (+) Length   209 a.a.
NCBI ID   WP_000839151.1    Uniprot ID   B7UN38
Organism   Escherichia coli strain 723_010814_2_1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1657231..1667860
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0U14_RS07815 ycbZ 1657621..1659381 (-) 1761 WP_000156502.1 Lon protease family protein -
  AB0U14_RS07820 matP 1659567..1660019 (+) 453 WP_000877153.1 macrodomain Ter protein MatP -
  AB0U14_RS07825 ompA 1660095..1661147 (-) 1053 WP_001346420.1 porin OmpA -
  AB0U14_RS07830 sulA 1661503..1662012 (-) 510 WP_000288707.1 SOS-induced cell division inhibitor SulA -
  AB0U14_RS07835 sxy/tfoX 1662231..1662860 (+) 630 WP_000839151.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  AB0U14_RS07840 yccS 1662823..1664985 (-) 2163 WP_136678414.1 YccS family putative transporter -
  AB0U14_RS07845 yccF 1664995..1665441 (-) 447 WP_001261235.1 YccF domain-containing protein -
  AB0U14_RS07850 helD 1665564..1667618 (+) 2055 WP_001295938.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24163.08 Da        Isoelectric Point: 9.0428

>NTDB_id=917047 AB0U14_RS07835 WP_000839151.1 1662231..1662860(+) (sxy/tfoX) [Escherichia coli strain 723_010814_2_1]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
CLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=917047 AB0U14_RS07835 WP_000839151.1 1662231..1662860(+) (sxy/tfoX) [Escherichia coli strain 723_010814_2_1]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGAGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
TGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCAGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B7UN38

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995