Detailed information NTG0917020

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: AB0U14_RS00290
• Genome accession: NZ_CP160112
• Coordinates: 45140..46165 (-)
• Length: 341 a.a.
• NCBI ID: WP_000644908.1
• Uniprot ID: -
• Organism: Escherichia coli strain 723_010814_2_1
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 40140..51165

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB0U14_RS00260	zapB	40224..40469 (+)	246	WP_001296623.1	septal ring assembly protein ZapB	-
AB0U14_RS00265	rraA	40554..41039 (-)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
AB0U14_RS00270	menA	41132..42058 (-)	927	WP_001305044.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
AB0U14_RS00275	hslU	42125..43456 (-)	1332	WP_001293344.1	HslU--HslV peptidase ATPase subunit	-
AB0U14_RS00280	hslV	43466..43996 (-)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
AB0U14_RS00285	ftsN	44089..45048 (-)	960	WP_000068834.1	cell division protein FtsN	-
AB0U14_RS00290	cytR	45140..46165 (-)	1026	WP_000644908.1	DNA-binding transcriptional regulator CytR	Regulator
AB0U14_RS00295	priA	46321..48519 (-)	2199	WP_001296625.1	primosomal protein N'	Machinery gene
AB0U14_RS00300	rpmE	48722..48934 (+)	213	WP_000710769.1	50S ribosomal protein L31	-
AB0U14_RS00305	yiiX	48995..49603 (-)	609	WP_000702314.1	YiiX family permuted papain-like enzyme	-
AB0U14_RS00310	metJ	49663..49980 (-)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37847.80 Da
• Isoelectric Point: 6.3842

>NTDB_id=917020 AB0U14_RS00290 WP_000644908.1 45140..46165(-) (cytR) [Escherichia coli strain 723_010814_2_1]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSRAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=917020 AB0U14_RS00290 WP_000644908.1 45140..46165(-) (cytR) [Escherichia coli strain 723_010814_2_1]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACTGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGACCCT
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAACTGGAG
CTGCCTACCGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAGAGCAATGCAACAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGTCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	63.881	98.24	0.628
cytR	Vibrio cholerae C6706	65.138	95.894	0.625